Gene detail

Detailed information of SKAU_T00001060 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00001060	TRANSGELIN	CM056376.1	1983020	2032956	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00001060

AAACCATGCAACAAGACCAGTGTCTGTAGTAGCCTATTTTAATACGGCGAAACATTTTCAAAATTGAATTGGTCCACCCCTGACCTGAAAATCTATAGGCTATCTTGCCATAGCGTTTCATTTCGGCGTCTGCCTTGACCGCACTTTTCGATTAATAATCCAGTCGACATCAGAGAATTAAAGCAACAACGTGGGAAAACGCGGTCAAACCCAGGAGTCAGTGGAAGGGGAATGAGCACTCCCGGGACTGCTCGGGAAATTGGCCATGCGAACCGGAGGCGAGGATGGAGATTTTAAAGGGACACCGGCACGACTGAAATCGGGAGAGGCCTAATGGTTTTGAAAATCACTGTGCCATAGCTAGATAAATTTAGATAATGCGTCGAGTAGACCAGAGCTGGTTGCTGACTGGTGGCTAATATTCCAGTCTGCTATAATGCCAGCCCTCTTCTTGGCTGTCCGCCTCCTCAACTCCGAGGGAAAGTTGGCTCGCAGTTATCTTAAGTTAAGCTATGCAGTTAGATCAATGTGTAGCTAACGAGAGGGCAAAAGTCTGCCGACGTTTAAATGACGATCTGCGGATTGGACTAAGATGCCATGAGTGAAACACTGATGTGATTCCTTTAGACAGGGAGTAGGCTAgctatcttgtttttttttttctggatagCGTTTGACTTTCGATTTGTTTCCTCCCGTCCACGACAGCCTTTCGTGTATGTTTAGGGAAGCATTTCAAAGTTAGTCTTCAGTTCAGAAGATGCATAGACGCCGTGGACTTAGAAACAAATGTAGCTTGCTGGATACTTTGTGAACGTGGGGAACACACTCGGACCACGGGACCGCATTCTGCCTAATGGTTTTCTTCAGTGCAACTTATCCAAGTTGGAAACCCTCAAACAACGGCAATGCTCACAATAAAGGAAGCAGGCATCGTCCAGGCATTCGGAGAACACATCCACGCGCCGGGGCTGATTCGACTGGCAAGTCTAGCGAAGAGTACCTGTATGCCATGAAAGAGGACCTCGCAGAGTGGCTGAACACGTTGTATGACCTGGAGATCACGGCGGACACGTTTATGGAGTCACTGGAGACTGGCTGTGCCCTCTGCCGCCACGCCAATAACGTGAACCGCGCGGCGCTGGACTTCCAGCTCGAGTACCCAGAGGCGGCGCAAGCCATGCGGATGCCAAGCAAAGACGTGGTATTCCAGTCGCGTAACGCCGTGCCGGGGTCCTTCCTGGCACGGGACAACGTGTCAAACTTCATCGGTTGGTGCCGCCAGGAGCTATGGATCAAGGACGTGTTGATGTTCGAGACCAATGACCTGGTGCAGAGGCGCAACGAGAAGAACTTCGTGCTGTGTCTGCTGGAAGTGGCGCGTCGAGGTGCCAAGTTCGGCATGCTTGCGCCAATGCTGATCCAGCTggaggaagagattgaggaagaGATTCGGGACCAGGAGAACCTCTGCGAGCCAAGTCCACCCACCAGGGCGATTAGTCGTACGGAGAGTGTAGGAGACCCCCCTCCTGGCTTGTACCCCAACTGGCAACAAACAAGGGTTCTTTGTGACATGCGTAACCTGGATGAGTTGGTGCGGGAGATACTGGGGCGCTGTTCCTGTCCCGCCCAGTTTCCCATGACGAAGGTGTCCGAGGGAAAGTACAAAGTGGGGGGCTCCAGTGCTCTGATCTTCATTCGGGTACTTCGCACTCATGTGATGGTGCGTGTAGGTGGAGGCTGGGACACCCTGGAGCACTACTTGGATAAACACGATCCCTGCCGCTGTTCTGCCTTCGCTCACCGGCACCAGCAGTCCAAAGCGGGGGGGGCAGGGCCCGCCACACCGCCCGGCTGGGCCGCCCCCATCGGCCGTCCCTCCCTGTGGAGCTGGATGCCAACGCCAACGCCGGCCGCGGCCACGCCCTGCTGCCACGCCCACCCCGGGGACCGCTCTGAGCCACGCCATTTCACccctctcagGGGAGCCTTTTCAGTGGTGCGCAGATGTGTCAAACTGTGCACAGGCCAGGAATACGCTGCCAAAATAATCAACACCAAAAAGCTCTCTGCAAGAGATCATCAGAAGCTGGAACGTGAAGCTCGTATCTGTCGCCTACTCAAGCACTCCAATATCGttCGTCTCCATGACAGTATATCAGAAGAAGGATTCCACTACCTCCTCTTTGACTTGGTGACTGGGGGAGAGCTGTTTGAAGATATTGTAGCCCGAGAATATTACAGCGAAGCGGACGCCAGTCACTGTATCCATCAGATTCTAGACAGTGTCCATCACATTCACCAACATGACATAGTTCACAGGGACCTGAAGGTCAGTATGTGCAGTGCAGCACTGTCCTGCCTGGCCCCTCCCTTAACTCTGCCTGTGTCCgcttccgtccgtccgtccgtccgtctgtctgtggtTCCGGCATCCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan
PF02187	GAS2	Growth-Arrest-Specific Protein 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR003108	Domain	GAR domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036534	Homologous_superfamily	GAR domain superfamily	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46756	TRANSGELIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001578	Biological Process	microtubule bundle formation	Interproscan
GO:0001725	Cellular Component	stress fiber	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005884	Cellular Component	actin filament	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0008093	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0031110	Biological Process	regulation of microtubule polymerization or depolymerization	Interproscan
GO:0035371	Cellular Component	microtubule plus-end	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051764	Biological Process	actin crosslink formation	Interproscan
GO:1904825	Biological Process	protein localization to microtubule plus-end	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-