Gene detail

Detailed information of SKAU_T00000430 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00000430	2-OXOGLUTARATE DEHYDROGENASE	CM056376.1	751927	792108	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00000430

ATGCACCGCTTAAGGACTTGTGCTTCACGGCTGCGGCCCCTCACGGCCTCTCAGACTGCTCAGAACATCTCGCAGCAGAGGCAGGGCCCAAGGACGTTTCAGTCAATGAGGTGCTACACCGCGCCTGTGGCGGCCGAGCCCTTCCTCAATGGGACGAGCTCCAACTATGTGGAGGAGATGTACTATGCCTGGCTGGAGAACCCCAAAAGTGTGCATAAGTCTTGGGACATTTTCTTCCGGAATGCCAACGCGGGAGCGCCGCCCGGCGCGGCCTATCAGAGCCCGCCCCCGCTGGGCGTGAGCCTGTCTGGGCTGGTGCAGGCGCGGTCTCTGATGGGAGCGCAGCCCAATGTGGAGAAGCTGGTGGAGGACCACCTGGCGGTGCAGTCCCTCATCCGCGCGTACCAGATCCGTGGACACCACGTAGCTCAGCTGGACCCCCTGGGGATCATGGACGCCGATCTGGACTCTTGCGTTCCCACTGACATAATCACGTCCTCGGACAAACTCGGCTTTTATGGGCTGGATGAGTCTGACCTGGACAAGGTGTTCCGCCTGCCCACCACCACCTTCATCGGGGGCAGCGAGAGCGCCCTGCCCCTCAAGGAGATCATCCGTCGCCTGGAGATGGCGTACTGCCAGCACATCGGGGTGGAATTCATGTTCATAAACGACCTGGAGCAGTGCCAGTGGATTCGGCAGAAGTTCGAGAGGCCGGGTGTGATGCAGTTCTCTCTGGAGGAGAAGAGAACCCTGTTGGCCAGAATGGTTCGCTCCACCAGGTTCGAGGAGTTCCTCCAGAGGAAATGGTCCTCGGAGAAGCGCTTCGGACTGGAGGGGTGTGAATCTCTCATCCCCGCCCTCAAAACCATCATCGACAAGTCGAGCGCGAACGGCGTGGAGAACGTCATCATGGGCATGCCGCACAGGGGTCGTCTGAACGTCCTGGCCAACGTCATCCGCAAGGAGCTGGAACAGATCTTCTGCCAGTTCGACTCCAAGCTGGAGGCAGCCGACGAGGGCTCCGGGGACGTGAAGTACCACCTGGGCATGTACCACAGGAGGATCAACCGCGTGACCGACCGCAACATCACCCTGTCCCTGATGGCCAACCCGTCTCACCTGGAGGCCGTGGACCCCGTGGTGCAGGGCAAGACCAAGGCCGAGCAGTTCTACTGCGGGGACAACGACGGGAACAggGTGATGTCCATCCTGATTCACGGTGACGCGGCCTTCGCTGGCCAGGGCATCGTGTACGAGACCTTCCACTTGAGCGACCTGCCGTCCTACACCACCCACGGCACCGTGCACATCGTCGCTAACAACCAGATCGGCTTCACCACCGACCCGCGCGTGGCCCGCTCCTCGCCCTACCCCACCGACGTGGCCCGCGTGGTCAACGCGCCCATCTTCCACGTCAACGCCGACGACCCCGAGGCCGTCATGTACGTGTGCAACGTGGCGGCCGAGTGGAGAGCCACCTTCCACAAGGACGTGGTGGTGGACCTGGTGGGCTACCGGCGGAACGGACACAACGAGATGGACGAGCCCATGTTCACGCAGCCGCTCATGTACAAGCAGATAAAGAAGCAGAAGAACGTGCTGCTGAAGTACGCCGAGAAGCTGATCGCCGAGGGCGCCGTTACGCGCCAGGAGTACGAGGAGGAGATTGCCAAATATGACAGGATCTGCGAGGAGGCGCACGCGCGCTCCAAGGATGAGAAGATCCTCCACATCAAGCACTGGCTGGACTCCCCCTGGCCTGgtttctTCACCCTGGACGGTCAGCCGAAGAGCATGAGCTGTCCCTCCACCGGCCTATCAGAGGAGGAGCTTGCACACATTGGGCAGGTGGCCTCGTCTGTGCCTGTCGAGGACTTCACCATCCATGGagGTCTGAGTCGTATCCTGAAGGGCAGAGGTGAGATGATAAAGAACCGCACGGTGGACTGGGCGCTGGGGGAGTACATGGCCTTCGGCTCCCTGCTGAAGGAAGGCATCCACGTGCGGCTCAGTGGCCAGGACGTGGAGAGGGGCACCTTCAGcCATCGTCACCATGTTCTTCATGACCAGAATGTTGACAAGAGGATTTGTATCCCCATGAACCACGTGTCTCCGAACCAGGCGCCCTACACCGTGTGCAACAGCTGTCTGTCTGAGTACGGAGTGCTGGGGTTCGAGCTGGGCTTCGCCATGGCCAGTCCCAACGCGCTGGTCCTGTGGGAGGCCCAGTTTGGGGACTTCCACAACACGGCCCAGTGCATCATCGACCAGTTCATCTGTCCCGGCCAGGCCAAGTGGGTCAGACAGAACGGCATCGTCCTGCTACTGCCCCACGGCATGGAGGGCATGGGCCCTGAGCACTCGTCCGCTCGCCCCGAGCGGTTCCTGCAGATGTGCAACGATGACCCGGACGTGTATCCCAACATCGCAGATGACTTTGCAGTGCAACAGCTCTATGACTGCAACTGGATCGTGGTCAACTGCTCCAATCCCGCCAACTACTTCCACGTGCTGAGGAGGCAGATCCTGCAGCCCTTCAGGAAGCCGCTCATCGTCTTCACTCCCAAGTCACTGCTGCGTCACCCTGAGGCCAAGTCCAACTTTGATGACATGTTGTCAGGCACTCACTTCCTGCGTATTATCCCAGAGGAGGGCCCCGGCGGCCCAGAATGCCGCGGGGGTGAAGCGCATCGTCTTCTGCACAGGGAAGGTGTACTACGAGCTCAACCGTGA

Transcript

SKAU_T00000430

GGCCGACTTgtgcatacaccctccaggtGTTTTACTGTCTCTAAAAAAATAGTTGAGGTCAgactgttaatttgaatgttcaTTTTCGTGTGAACTGTCACTGTAGTGATTTTACTTTAACGGAAGTTATAAAGTAAGCTGAGTTTAGGTAATTCATTTTCAAATTATGTGAAGCTGAAGTTTAAGAAATGCAATATCAATTTAGCTACGATATTGCATTTCTTGTAAAAACTTTATCACTCATTTATTTTTGATTGATTAATTCTGTCCGATGCGACCCCGTTTATTTTATCATATCATGGAGAATTTGCCTTTGTAACATTATGCCGACGCATGAGAAGAAATGTTGAATATCTGAAAAGTCAATCACAATGCATGCAGTAAGCTCTGCGGCTGCGCGAGGACGAAGTTTGCCGTGCAAGTTGTTGCAGTTGCAGTACATTGACGTCTGAGCGTCATGACGCAGTAGGCCCCAGCTTTGAGTTGCTTCTCGTTGTCATTTCCAGTCAGGAGAGTCGGTAAGAATCGCGGCTGTGGGCAGAGCCGTCGTTAGCCATATTTATTTGTGGAAATAATTTGGACACTTTCACCTCCCAGACGACTGGAAAGAGACTCAAAgtagtGGGAGAAAACAAACGAGGACAAGATTGAAGACGAAGACGGCAGTAAGGAGGTTTCCATTGGACCATCcgacgggggggaaaaaaaggaaaacgagTTCAGAGAAAGAGTTTTCCCGCTTCCCAGCTGTGGATTTGTTGAGGTGGGAGGTGTGTGCTAAAAGACTGCGATGCACCGCTTAAGGACTTGTGCTTCACGGCTGCGGCCCCTCACGGCCTCTCAGACTGCTCAGAACATCTCGCAGCAGAGGCAGGGCCCAAGGACGTTTCAGTCAATGAGGTGCTACACCGCGCCTGTGGCGGCCGAGCCCTTCCTCAATGGGACGAGCTCCAACTATGTGGAGGAGATGTACTATGCCTGGCTGGAGAACCCCAAAAGTGTGCATAAGTCTTGGGACATTTTCTTCCGGAATGCCAACGCGGGAGCGCCGCCCGGCGCGGCCTATCAGAGCCCGCCCCCGCTGGGCGTGAGCCTGTCTGGGCTGGTGCAGGCGCGGTCTCTGATGGGAGCGCAGCCCAATGTGGAGAAGCTGGTGGAGGACCACCTGGCGGTGCAGTCCCTCATCCGCGCGTACCAGATCCGTGGACACCACGTAGCTCAGCTGGACCCCCTGGGGATCATGGACGCCGATCTGGACTCTTGCGTTCCCACTGACATAATCACGTCCTCGGACAAACTCGGCTTTTATGGGCTGGATGAGTCTGACCTGGACAAGGTGTTCCGCCTGCCCACCACCACCTTCATCGGGGGCAGCGAGAGCGCCCTGCCCCTCAAGGAGATCATCCGTCGCCTGGAGATGGCGTACTGCCAGCACATCGGGGTGGAATTCATGTTCATAAACGACCTGGAGCAGTGCCAGTGGATTCGGCAGAAGTTCGAGAGGCCGGGTGTGATGCAGTTCTCTCTGGAGGAGAAGAGAACCCTGTTGGCCAGAATGGTTCGCTCCACCAGGTTCGAGGAGTTCCTCCAGAGGAAATGGTCCTCGGAGAAGCGCTTCGGACTGGAGGGGTGTGAATCTCTCATCCCCGCCCTCAAAACCATCATCGACAAGTCGAGCGCGAACGGCGTGGAGAACGTCATCATGGGCATGCCGCACAGGGGTCGTCTGAACGTCCTGGCCAACGTCATCCGCAAGGAGCTGGAACAGATCTTCTGCCAGTTCGACTCCAAGCTGGAGGCAGCCGACGAGGGCTCCGGGGACGTGAAGTACCACCTGGGCATGTACCACAGGAGGATCAACCGCGTGACCGACCGCAACATCACCCTGTCCCTGATGGCCAACCCGTCTCACCTGGAGGCCGTGGACCCCGTGGTGCAGGGCAAGACCAAGGCCGAGCAGTTCTACTGCGGGGACAACGACGGGAACAggGTGATGTCCATCCTGATTCACGGTGACGCGGCCTTCGCTGGCCAGGGCATCGTGTACGAGACCTTCCACTTGAGCGACCTGCCGTCCTACACCACCCACGGCACCGTGCACATCGTCGCTAACAACCAGATCGGCTTCACCACCGACCCGCGCGTGGCCCGCTCCTCGCCCTACCCCACCGACGTGGCCCGCGTGGTCAACGCGCCCATCTTCCACGTCAACGCCGACGACCCCGAGGCCGTCATGTACGTGTGCAACGTGGCGGCCGAGTGGAGAGCCACCTTCCACAAGGACGTGGTGGTGGACCTGGTGGGCTACCGGCGGAACGGACACAACGAGATGGACGAGCCCATGTTCACGCAGCCGCTCATGTACAAGCAGATAAAGAAGCAGAAGAACGTGCTGCTGAAGTACGCCGAGAAGCTGATCGCCGAGGGCGCCGTTACGCGCCAGGAGTACGAGGAGGAGATTGCCAAATATGACAGGATCTGCGAGGAGGCGCACGCGCGCTCCAAGGATGAGAAGATCCTCCACATCAAGCACTGGCTGGACTCCCCCTGGCCTGgtttctTCACCCTGGACGGTCAGCCGAAGAGCATGAGCTGTCCCTCCACCGGCCTATCAGAGGAGGAGCTTGCACACATTGGGCAGGTGGCCTCGTCTGTGCCTGTCGAGGACTTCACCATCCATGGagGTCTGAGTCGTATCCTGAAGGGCAGAGGTGAGATGATAAAGAACCGCACGGTGGACTGGGCGCTGGGGGAGTACATGGCCTTCGGCTCCCTGCTGAAGGAAGGCATCCACGTGCGGCTCAGTGGCCAGGACGTGGAGAGGGGCACCTTCAGcCATCGTCACCATGTTCTTCATGACCAGAATGTTGACAAGAGGATTTGTATCCCCATGAACCACGTGTCTCCGAACCAGGCGCCCTACACCGTGTGCAACAGCTGTCTGTCTGAGTACGGAGTGCTGGGGTTCGAGCTGGGCTTCGCCATGGCCAGTCCCAACGCGCTGGTCCTGTGGGAGGCCCAGTTTGGGGACTTCCACAACACGGCCCAGTGCATCATCGACCAGTTCATCTGTCCCGGCCAGGCCAAGTGGGTCAGACAGAACGGCATCGTCCTGCTACTGCCCCACGGCATGGAGGGCATGGGCCCTGAGCACTCGTCCGCTCGCCCCGAGCGGTTCCTGCAGATGTGCAACGATGACCCGGACGTGTATCCCAACATCGCAGATGACTTTGCAGTGCAACAGCTCTATGACTGCAACTGGATCGTGGTCAACTGCTCCAATCCCGCCAACTACTTCCACGTGCTGAGGAGGCAGATCCTGCAGCCCTTCAGGAAGCCGCTCATCGTCTTCACTCCCAAGTCACTGCTGCGTCACCCTGAGGCCAAGTCCAACTTTGATGACATGTTGTCAGGCACTCACTTCCTGCGTATTATCCCAGAGGAGGGCCCCGGCGGCCCAGAATGCCGCGGGGGTGAAGCGCATCGTCTTCTGCACAGGGAAGGTGTACTACGAGCTCAACCGTGAGCGCAAGGCCCGGGGCATGGAGGACACCGTCGCCATTGCTCGCGTCGAGCAGCTATCTCCATTCCCCTTCGACCTGGTGAAGGCGGAGACTGAGAAGTACCCAGGGGCGGACCTGGTGTGGTGCCAGGAGGAGCACAAGAACCAGGGTTACTATGACTACGTCAAGCCCCGCATGCGCACCACCATCGAACGCGCCAAGCCCGTCTGGTATGCGGGTCGCGAGCCAGCCGCCGCTCCAGCCACCGGAAACAAGAAGGCTCACCTGTTTGAGCTGAAGCGCTTCCTGGACACTGCCTTCGACCTGGACGCCTTCAAGGATCACATCTAACCCCCCCGGTCCCGTCCCAGGACACGCCCAACAACCGCACAAACACCTCCGTCCCACTGCCCCATTCATGCATCGTCACCCACATATCCAAGGACTCAGCGCTCAGAGccaaactgcccccccccccccccccattatgcaGCCAGTCAACACAGTCATCGGCTCCTTTAAAGATATCTCCCTCTATTTACGCTGTTAGCTGGAGTTTCAGCTGTAGATAACGATCAAATCCAAACATATCTGCTATATAAATACAGACGCCGTGATTGATGGTACCGTGTTTCCAATTCTTTATTCCTTATTCCTGTTGTTTTACAGTATCTGGGTGTTACTGTTGTTTTACAGTATCTGGCTCTTACTGGTGACACTACTCACAGGCTTCCTTTGACTCTTGCAGGGTTTGTGTGTTTCTCTGGTTTCACCCATATAACCATAAGCTAATGCCTGTGAAAGTTACTCTCTTAGACAACCTTGCTTGTGATTTTGCTTGTGATTTTGTTAGCAGGTAGTGTCTCCTGGTTTGAGGCAATGGGAATCGCTGTTGTTGTTTGTCGGAAGCCTCAGACAGCGGACATTCGCTCTGGTGGTTAACCCCGAGAGCATGTGGGATTGCGCGTGGAGGCCGCATGGAATTATGGGACGGGTGATGTCACTGCTCCCTGGTCCTGGTCCAGTCCTCACACTGGctggtcatgggggggggggtccccagCTTCCCTCCTGCTTTTTAGTTCCTGAAGGCACATTGTGCTCTGAGTGCAAAGAATCAACCCCTCACCCCCCTTTTTTCCGTAGAGCTACTCTCATCAGTAatggattaaattttttttttcctgattgtTTGAATAACTTTTGTATTGTTTTTGATTTACTATTAGCATCAGCTCATAACCGTTAAATGGAAGTGATGAAAAGAAATGTGCGGACTCTCCTGTGCAGCTCTCAGTAGCGACGCGTTTTTATTTCCCTGCACTGTGTCTCATGAGCGGGGCTGAACGGTTAATGAGGGTAAAAGATTGATTGACTCGTAGGACGACTGCACTGTATCGATATGTATGAGGTATATTTACATTAGAGGTGCCATTTGTATATTATTGTGAATATCGGAGCGCTCGggctgatgtctgtgactgagTTGACTGGCTTCTTGTGCGTTCCCCTGTCCCACTTTGGGACGGGCTGAGTTTTAACTGGCCGTTACGCTCCTGTTCACTGGACGTCTCTCGGTAGCACCTGTCCCCAGTCTGACACTCATTTAAACTcgctttttctttttaaaggtcATGGCATCTGTCCTCCATATTTctcttgttcctctctctctctctcccttcctgccTCACTACTCCCTCTTCACTTTTCTCTCCTGTGCCAAAAAAGAGAATCATTTTCAATGGATTAGGAAATTAAGATTACTAGGAGAAAGGTGGTGGAAAGGAAATCAACATTCTTTCTGAAAGACGTAGAACTTTCTAGaagcaaaaatgaatgaaaaaaaaaaagaaagaaagtgcTATTTGGACCTCTGGACACGAAGcatccaatttatttattttcaaaatgggtgattTCGCTTTTTTCCTTTATTATTTTGCTTCATTCAATAAAGACATTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00676	E1_dh	Dehydrogenase E1 component	Family	Interproscan
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF16078	2-oxogl_dehyd_N	2-oxoglutarate dehydrogenase N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001017	Domain	Dehydrogenase, E1 component	Interproscan
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR011603	Family	2-oxoglutarate dehydrogenase E1 component	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR032106	Domain	2-oxoglutarate dehydrogenase E1 component, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23152	2-OXOGLUTARATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004591	Molecular Function	oxoglutarate dehydrogenase (succinyl-transferring) activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016624	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Interproscan
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0045252	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-