Gene detail

Detailed information of PE_Scaf8562_4.13 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf8562_4.13	BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER	Superscaffold13	34359214	34361830	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf8562_4.13

ATGACGGACGCCGCGCCGAGTGCTGAGAAACAATGCCACATCATCGCAGCTCTGGAGCAGGAACCTCTGGTAGCTTCGCATCACTACTTCGTGGCAACGGAGTGGTACGACAAATGGCAGGCTTATGTTGGTTATAAGACGCAGCAGACGCCAAACAAGGCTGGCCGACCAGGCTGTGTGACAATGCATGACAATTACTTAGTCGCCAGTAATTCTTACGCGAATCAAGCAATACGTCTGATTCCAGGCTCCCCCAACATGTTGGTAGATGACAAGATCTGGTGTAAATGGGTTGAGTGGTACGGTGTCGCCGACTCACATCGTCTCCACCGGTGCAAAACAAATGTCACGATCCAGGGGGTTTTCAGTGTATGCATGCTGCACCCGTACAGCCAGCTTGTGAAGAATCCAAAGAAAATGTTAGACACGACAGAGGAATGTGGCTATATCGAGCTGCAGCTTCGCAGAATGTTCGGTGTCTCGGCCGACAGGAAGACGAGACTGTGGGTGCGTGAGAAGTCAACCGATGCCCGTTTCCAACTGATGTCTGATCGCAACAACTCAATCAGCAACGTTTTCCCTCAGCTGGTTTCACACTTTCCTAGTGATCAGTATTCTGTAGGTACAATACAATATGTATGTGGGCATATTTTCAACAAAAGATTTATAAACAGCCACTCGTTTCTTAATGGTAGTTATTGCTTTAAAATGATTACTCATTCAACGAACATCCGGCTAATGATTATGGAACATAGAGTAGCCCTTTGAATGGATGGGTCTGTTCGTTTCTGTTGTAAAATCGTGTCATACATTATACATTATGCATTTTCTAACATACTTACTGCCCAAATGTGTCCCTAACGAAGCAAAAACAACTTGTGAATTCAACAGTTCAATGTTTAAAATAATCGCCGAGCTCTCACTCAAATCCCCGAGTAACGAGCTCATATACATAATTCCGAGAAAGGTCGTGACCCGACGACGATATAATGATATAATCACGTGATGCTCATCGATGTCATTAGTTATTGGAACTGAGGCCACGCCTTCGAAAATTGCCCTGAAAGCAAACTGCTCTCTCCCGAAATACTTCAATGACAACAACAGCAAACCATTCATTAAGACATTTTGACGGTTTGTATTTTATAATAGATACAGTTTATACTGTATGAGATGATTTTACGAAACAAAATCGAAAGGAAAACCTCCTTTACCATATTGCAACTGATCTCGATATATGGTTTATATTAAACTTATACGTACTGTTTAGCAGGAATTTTTTTAGCAACATTGTTGCTTTCCTTCTATGGATTTAACAGTACATGATATTAATAAGCATTAATCCGTGCTTCAGAAATGTCACATTAAAGTCTATAAGCGGGGTTTTACATCATATACATATCAATTGAAATAATACAATTTCCATTGATCTTATTATATCAACTATATCATGCTGGTGTTTCGGGGGAAACTGTTTACATGGCAGCGCGTCGCTTTTGTATGCGTGGCCTCACGCCCGGTCTCTGATTAGATAGACACGCAATACGTAATCACGTCCCCGTTGGGATACGACCTTCTTTGGAATTAACCGGGTTCGTTAATCGGCCATTTGAGGAACAACTCAGCATTTTCTTTAAACATTGAACAGTTGAATATAAAAGTTGTTTCCGTTTTGTTAAAACATACTTGGGACGAACTTGTGTTGGAATACATATAGTTAAATCTTTACAACACGATTTTATAATAAAAGCAAAAGGGAATCCTCCCTTTTACGCTGTCGTAGGTGGTATAACTCTGGTTTTGTCTGCAGGGGACGGACGTTTCGCATATCTACACCATCGCGCTTGAGGTTTGCCGTGCCGACGGAACATGGCTCACACCAGAACCAACCTCCTCAAAAGAGAATACGAATGAATACTTTGACAATTACCTTCCTTTCACAGGATGTCCTTCGCACTCTTGGTTAACGGAGGAAGATTTGTCATCGACAGTCAAATCGATGTTTGATGGATTCAGCAGCACACTTCAAGAGATTGTCGGTGGTATTGTTGAGCTGGGTGCGAAGATGAAACAGGTCAAAAAGACTCAGAAAGAACTTGACGAGAAGCTTCGTGTTGTGTGTGACGAGGAGAAAGAGCTGAAGGCGAAAGAAGAGCAATTGGAGAGAGAGAGGGAGAATGTGAAGGAGGACTGGAAGAAACTGCAGCTGGAGATCGAGCACATGTCCGAGATCAACAAGATTCAAGAGAGTCGGGTCAAGCTGGACATAGGTGGACACCTCTACACCACATCGACGCTGACCCTCACCAGAGACCAAGACTCGATGTTGGCGGCCATGTTCAGTGGCAGACATTCCGTTCAGCGAGAGGAAGACGGGAGTTACTTCGTTGACCGCGACGGCACTCACTTCCGGTACATCCTCAACTACCTGAGGGACGGAGGCTTTATGAACGAAACACAGCCCAGCGATGTCAACATTGTGAGGGAACTTCTGACAGAGGCCGAGTATTACCAGCTGAGTGGATTGGTGACGCTACACCCGAAAGCAACCGGTTGTAGTTTATTTTTCGACATGACCATGATCTGTCACCCCACGCTACGTACAGTCGTTCGTTAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02214	BTB_2	BTB/POZ domain	Domain	Interproscan
PF06337	DUSP	DUSP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR003131	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR006615	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR035927	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR045068	Family	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1/2/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11145	BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0051260	Biological Process	protein homooligomerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf8562_4.13 global RNA-seq network