Gene detail

Detailed information of PE_Scaf8559_3.20 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf8559_3.20	HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26	Superscaffold8	44972065	44976757	+

Gene Structure

More details in Jbrowse Sequence

CDS

PE_Scaf8559_3.20

Transcript

PE_Scaf8559_3.20

ATGATGTCGTCTTCAGGAAACGTGGAAGGAGGCCTGGCGCTTTCTTACAAGCCGCCGATTACCGACACCGATGCTTCTGGAAAAAGCGACGTATTGACGCGCGGACCGGCGCCGGTAGAATCGACGACTCGCAGCGAGTCTCCACTAGAACTCGGCAGTCTGTACAAGGTGGCCAACTTACTAAAGGACCGCTGGATCGACAAGAACGAAACCGACCCGCTGGCGAATGGGTCGAGTGACAAGGACTTGTACCACACGACGGGGGAGGAGAACGCGACGAACGGAAAGAACGCGTTCATCTCGGGACACTTCAGCGCCATGAGCAGGCGGCTGTCGGAACAGCCGATGAACGGGCACCCGACGGAACACGAGTTCTTCCCGCGCGAAGGCTCGCACATGCTGCGTGGAATCCTGCAGCGCAAGGAGAACGAAGACGCGGCGACGCCGGCCAGCGGGGAGTGCGTGGACACCGCCGACAGCGGAGTGTTCGCACAGATGCTTCAGAACGACCGCGAGCGACCGGGGCTGGCGAGGAACGGTGGTTACGAGGTGGACGCCGACAGCGACTCGCTCTACTCAGGTACGCCCAACGAGATGTCGTCGGTAGAGGAGGCAAGCGACCAGGAGCCGGCGCTCGCTGATGCGACCTCCTATTCCAGCAAGGTGATGGACTGGAACGACGACGCGGCGAAGCATGGGAGCGGAGACGACGGTCAGACGGGCGACAGCACGGGGGACTCGGCCGAGGCGAAGAGGGCTCGTGTCGAGAACATCATCAGCAGCATGAGACCCGGCTCGCCGCCGTGTAAGATGACCGACGGCAACCACCCCCCGTCTCCAGGACGGAGACCGAAGCGCAAGCAGTACACACCGCAACAACACGACGCCAATGGGGACGAGCCGTGCAGCAAGCAGCGGCGGCAGGAGAAGAGTCTCCTGCAACAGCAGCTCAGGTTCATGCAGGAGCAACTGACGAAGATGCAAACGAAGTACGCCGAGCTGTTCGACGACGAGACCGTCGACCTGTTTGGAGACAAGCCATTCGGCCCGGACAAGGACGAATCAAAGTTCGACGATCAGAACAAGATCGGAGTGCTGTCCGCGGCAATAGAGCAGATGACCGACGCGACGGACTTTGTGCGGCGGGCGAGCAGGCTCAACGAGACGTCAACGAAGCCGCAGGCCGTCGCACTGAGAGCCGGTGCGCCGTCCGACCTTCGGGGCTTCGCCAAGATACTGAAGGCCGAGATTACACGAAGCGTCGGCACACTGGTCGACAGCATCGTCGCCAAGTTTGTCGAAGAGCAGAAGAAATCAGACAGTCGCTTCAAAGACATGCCCAGGTTGCCATGCTTCGACAAGGAGATCCTGAACAATAACAACAACAACAATAACTACGTCGCGAATCACCTCGCCGGCCGAGACAAGCCGTCGGCCACAACACGCGACGGTCCACGCCATTCCACCCCGAAGCCGACCCGCACAAAAGTTACGGACAAGATGCTGAACCCGTTCTTTGACGAGCACGCGAAGTCGTTCGCCGACCTCGCCAAGATGCACCCTCACTTCTTCGCCCCGCCACCCTTCTACTCGAACCAGATGGCGGCGGCGGCAGCAGCGGCGGCAGCAGCGGCGGCCTTGCAACCGGTGTACGGCAAGGAACCGGAGCAGACGGAGGCACTCTCCCTCGTCGTCAGCACTCCGAAGAAGAAACGAACGAAGGTGACGGATACTCGTCTGTCTCCACGGGCCGCACGCGCTCTGCTACATGACTCGTCCATGCAGGGCTCGCGACCGGACTTCGGCAGGCCCTTCCCACAGTCGGCCACGCCGCCGCACGAACGCTACCCAGTGCCGTCGTTGCTACCCATGAGTCTGCCCACTTCCGTCGCCATCCCCAACCCGAGTCTGCAGCACTCGGACGTGCTAGCGATGTATAGTCACGGCGGCGACCAGCGGACATTCGGTGATAGCCTTCATCAGATGTCTTCACACTCGCCGTTGACCGCCGAGCACGGGTCGCCAAACATGGCGCACACCCCGGACATTTCCCTGCATGCACCGCTCTACAAGACGTGCGACATGTACGACCACGCGCCGCTAGAGGGCAGTCACAACTGCGACGGCATCGGCCTAATATCCTTTCAATGTATCATAATCATTAGATTATATAGTTGTCCCAAGGCCGTGTCACATAAATCATTCTCAATACTTCTCCATTTATACATTTTATATTATTCAACTTATCTTAGTATGACTGTTGTTGCCCCTCTATTATTATATAAAAAATAATGGTCTTTCCCCAAATCACATGGAGCCGCCCTTTGCAACATTATCCTAAGAACTGGCAGTGTAGGGCATTGATATTTTTTTTCACGTTGCCTTATAATTATTATTTGTTACTACTAAGGGTATGCAACTCTTAAAAGCAACATATAACTTTTTAATTGTCATACATATATATATATATATATATATATATACGTATGTATGTATGTATGATAACAACAGTCGCGGATCTCTAGTGTCAAACACTGGGTCCACAACTGATCCGGACAAAGCACATTTAATTACGATTCTTTTCACTCTAACAAGGGACGTAACAAAAACAAGGGCATCAGTTGTCGTGAATAGTCTTACCACAACGAGACGTCTTTGCGTCACGTTTCGGAAACACATGACTTCCGGTGCAATCGGAACACCCACCCGAAGCAATCGACACATCCACCCGATGGCGAATACCTCATACATTTTCATCCGCGTGTGGCCTCGTCGCGATCACGTTCCGTTTCCTGTTTCCATGGCAGGTCTCGCTGCAAGAAAGATTAAGTTATCACCCGCAACTCCGAGTTACGGGTTCTTGACTTCGCCGCGCGATTAGCAGCGTAGCGCTTCGCTGCACGCGGCGAAGTGATATGCGGGTGGGGTTAATTGAAGCGGGCCTTTCTTCGCTCTTGGGTTTCTTATTGCGAAAACCTGCTAAATAACAAGTGCCTGTTGGCGTCTGCGGCCAAATCGTCTCGCACCTTTCGGGGGAAATGCATCTCGTTGGCAAGAATTGGACAAATTGACGCGGTCACCACGGGCTGTGCGTGTGGATTACAACACAATTAAATGTGCGTCTCCGGGAGCCTATTCAGCTCGGGTTGTGTGTAAATACCCGGAGGGAATATCATGAAAAATGGTTTACCACTAAGAAGTAAAGCGTGAAAGTTCGAGAAGTTCAGATGTCGCCGTGAGTGGGCCATGTGTTAAATGAACCTGATGGCTAGGCCAAAGTTCCACCTTACGGGTTTTGTCTGAAAAGTATGGACTAATTGTGCAAAACTAAGATTTTAGCCAATGATATGCAATGGTGGACACTCCGACTAGTCATGAATACCGTTAGCGTGGTAGGTCTACTTAGCGTTCATTGAAAAGCAGTGCGTGTGTGTATGTGCGTGTGTGTATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTATGTATATATGTACGCATGTACGCATGTACGCATGTACGCATGTACGCATGTACGCATGTACGCATGTACGCATGTACGCATGTACGTATGTACGTATGTATGTATGTATGTATGTATGTATGATTTGTATATAAGCCCTATATATCTGTTTGGTGTATGCGCACGTTTTTTTGCGACAATGTGTGGATGCGAGGATGGATTGCAGCAACTGACACATAACGTGGCCTTCTACAGTATCACTGGAGCTATTCTGTTCTCGCCCAGGCACGCGCGATTGTCTGCGCCTGTGGCGTACAAATAGCGCCCGGTTAAAGGCTGGATGACTTAGCGAGATCGACTAGACTTTTCTCATCCGGCTGGTCATGCGATGTCGCGATAGGGGCGCGTAGAAGGCGCCATAAATCGTACATTTGATACACTGCGTACAGCAAAAAGCTGCGCGATTGACGTTTCGTTTTGAGTGAGCGTCTCTAATCCGTTTTACGCATTCACGGCACACAAGAGAGCGATAAACGTTAAGACGCCGACAGCGTCCTTGAAGAACGCTCGCGCGCAAATGGCGCCATTCCACTCTATCGGCATTAAAACAAATCCGCGTGTAAAAGAACGACTGCCGGAAAGGCCTACTTGGTTCTTATTTGCCGCCATGAAAAATATACCGAGTAACAGTCGTTAAGCAATGACAACGACAACACGATCAATTGCAATATTATAAGAAAATGTCATAATTAGAGTTTATGTTTATCTTATATTAACCGATGTGAAAATTAATGACAGTCGTTTGCTGGTATCGGAATTAACACAAACCTGCGTGTATATATAAATATGAATACAATTGACAACTGTTTTCTTGTGTCGCCAATATAAATATACCCGTTAACTGCCAACACTGACAAGTACACACAAGTAATCAATTGTAATAAGACGACAGTGTCATAATTACACGTCGTTGTAACATTACATAAACTGAGGTGTAAACTAACGCAGTGCCCTATTATATAGGCGCCCAACATTAAAACGAGGACATGACATGCGTTTGGAATCGAACCGGGCGAGTTTATCGAGTGGTCAGGGACGCGGACGGGAAGCGAGGCCGAGACCGGGACGGTGTCTGGCGACACTATGCCTAGTGCCCTACGTGACCGCACTACCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR039350	Family	Prospero homeodomain family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12198	HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf8559_3.20 global RNA-seq network