Gene detail

Detailed information of PE_Scaf7798_4.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf7798_4.7	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Superscaffold6	64410625	64418126	-

Gene Structure

More details in Jbrowse Sequence

CDS

PE_Scaf7798_4.7

ATGGAGAGGGTCCAGTCGTACTTCTCTCTCATCAAGACCCTCGGACCGACACTCACCAACGACGCATCTAGGATTCTGGGAGCCTACTACAGAGCCCAAAGATCGGCCGATGGTCGCAATGCGGCCAGGACCACAATGAGGCTGCTCGAAAGTATGATTCGACTCTCTCAAGCTCACAGTCGTCTGATGTGTCACGACACTGTCACAGTTCAAGATGCCATTGTGGCAGTGTCTGTTGTCGAGTCATCCATGCAGGGGTCAGCCTTGCTGGGTGGGGTCAACGCCCTCCATACCTCGTTCCCTGCAGATCCTGACGAGGAGTACAAGTTACAAGTTGACTTGATCCTGTCGCGACTTGGGCTCCAAGATCTCCTCTCTTCAGAACTTGCCCGACTCCAGTCACTGGAGCCTCAACATGAGACAGCAACACCAGCAAACTCAGTCAGTCGCAGAGCTACTCTACAAACACGCACACCAGCTGAGAAACACCACCGAGACTATGGGGAAACTTGTGATACGAGGGGAACAACATTGAAGACACAAGTAGCAACACATTCAGAGGGTATTAGAAACAATGTCATGGCTGTGAGTGTAGATGATCTGTCTTCAGTAGGTGGCAGCAGTGTGTCAACAGAACCTTCGAATAAACGTAAGACAACCGTTGACTGTGTGACACCACAACGAGAGACCTGCGCAGAAGGTGAAATCTCAACTGTAGCTGGGTCAAGAAACTTGGCAAGAAGTCGTCATTCTACTGGTTCGTTGCACAGTGAGTCGTCTGACAAAGAGAACATTCAGAACTTGTCATCTGTGCCAACACTGCTGGACACGAGTGGGCAGGAATCGCTGGACGACAGTTTGTTTGGCGGACCATCATGGGTTCCAGGACGACAGCTTGGCAATGTGACATCAGAAGTGGCCAACAAAGCAAGAACAAGTTCTCTCTTCAAGTTTGCACAGAAGGAAAGAGCTTCAAACCCTGGCACGAGTTCTACTTGTGGGATGGAGACTGCATCAGGTTCAGGGAATGGACAGGAAGTTCATACCATTCCCAAGAAAGGGGATGGGATGGGAAGTAGCCAACAGGTTGGAATAAATCCCAGTGATGGTTCATCTATAGGAAGAACTATCAAGAGTCGGATCAACATGGCATCTCAGAGGGATCGTTCAACAGACATGGTGGACATCAACAGACTCACCTGTAGTGGAGTCTGCGCAGTGATATCATACAGTGGTCATCCACAAGATGAACATGTCCTTGATGCAGGGACCAACTCCACGACAGCACAGAACACAAGGAAGAACCATAAGAAAGCCCAGTCAAGAACGAAATCAACCAAGAAAGATGTTCGGCTGGAGCACAGTGATGAGGAGAGCAACATGCAAAAGATGAGAAACTACGTGTCCAGATTCAAGTACCGAAAAGGAGGTGATAATGGAGATGGGAAACATAGAGGAGCTGTATTGAAAGTTGTAGAAGGCAGCAGTGTTACAGCAGACACAGACAACCAGGAAACAGAAATAAACAGAGACAGAAACCATGACACAAGCGACACTCATGCCAGCAATGTTCCTCGACGACGCAAAAAGAAACCTGACACAGTTGGTGACACAAACATTGATGAAAAAGTAACACATTTGACTGGGAAAAGGAAAGCTGTTTCCAGCATTGTTAAAAACGTACACAAAAAGCAAAACTCTAATGTTGATCCGGTCAGCTCAGCGACGGGACAGTCGGGGATAAGCCCTGGGGGAAGAATGTCAATGGGAATGACGTCAGACACGACACCAGACAGTGACATGTCAAGTGTCACTGACACTGATAGGAGGAGACATCATGTGTCGCGGTCGACGCTGACAAAACTCAGTAAGTTTTCCTTCTTAGGATCACCTGTGGTTAGTCCTCCTACTGGTCAAATGGGCACTGGTCAGTCGGTCACTACTACAGCTATGACAGACAAAGAACACCCGCAGACCACCTCAAATACTGTTCAACCATTATGCCCTATTAATTCACCTCCTAACACAGACCCACAGAAATGTTCCCAAGCAAGTACGACTTCAGTCAAACCAAGCGAGATGCCGACCAGTAATACAGCCCTATCCCAGAGTTCAGTAGGAAGTGGTGGCACCACCGTCTCCGTCAAGTGTAATAACACAGACAAACAGAAGCGACTTGCCTCCATGATCGACCAATCACCTGCCTCCATGACGGATACTTCTCTACATGTAGGCACAACAGAATCACAGTCTTCAAAACATAAGTCACCATCCTCATCACAAACCGGTCTAACTTGGCCGTCCACGCAAACTCCGGACACAGTCACGAACCACAACTCACAGGCAGGTGTGGACAGAACTATTTCTTCCGGGCGGATGGATACGTTGCCCTGGGGAAGTGCGGTCGGGAAGACGGGACTGTTCACATGTGGGGATGAGTTGGAGGAGGAAGACTTGGACTGGGAGGGGTGCTTGGAGTGGGAGGGGTGGGGGAAAACACCCTCCAAGAGGAGTAAGGCGACATAG

Transcript

PE_Scaf7798_4.7

GAAATTCCTTGCTGCAACTTCCTCTAACTACATTAAAAATTTGACTATAGTGTTCTTGCCACATTCCACTTATGTTTGGGCTGCCATGTACATCACCCACAGTGTTTGGCAATTTAACATTACTGTTTGTGGAGTTTTGTCCTGCAGTGTTTCAGTGTGAACGTTGTTCTGTCCCCGCAGTGTCTCAGTGTGAATGTTGTTCTGTCCCCGCAGTGTCTCAGTGTGAACATTGTTCTGTCCCCACAGTGTCTCAGTGTGAACGTGGCCCTCGCGAGTCCTCTCCTCAGTCGCTTTGACCTCGTCCTGGTTCTCCTCGACTCACAGAACGAGGACTGGGACAGGGTTGTCTCATCCTACATCCTCGACGGGAAACACCCCCTAGGTAAGTCAAACAACCCCTAAGACAGTAACACTCCCTAGACCAGTGAGACACCCCCTTGTCAGTCAAACATCCCTAGGTCATTCAGACACCCAGTAAGTTAGTCAGACACTCCCTAGGTCAGTCACACACCCCCTAAGTCAGTCAGACACCCGCTAGGTCAATTACATACACCCTAGGTCAGTCAGACGCCCCCTAGGTCAATCGCGCACACCCTAGGTCAGTCAAAGGTCGATCGGTTTGTTTGATTTTTAGTCTAAGATCAAACATTTTAACCATATAACATGATAGTTATACAGTCCACGGTTGTGGAGTTATGCCAGGTCTTGCCTTGCCTAAGCACCACCAGTTTAAAATAAGAACACACTTGAACCTCGCATTATGGTCACCTCAGTAATACAGCCACCTCGCAATTAAGGTCACTCTGGGAGTCCCAAATTATTTTTGCAACAGAAAAGTATAGGAAATTAGTCCCGCTAATATGGTCACCTTGCTAGTCAGGTCACTTTTGCCCAGTCCCAAGGGTGACCTTAATAATGAAGTTCCACTCTACACAGTAATATTTCAATGATACTTTGATGTGACCTCCTCCGTCTACGCCTGGTACAGAGGACGAAGCGAATGAGAATGGTCTGTGGACCATGGAGAGGGTCCAGTCGTACTTCTCTCTCATCAAGACCCTCGGACCGACACTCACCAACGACGCATCTAGGTAAAACACCGTCTTCAGTCACATAGAATCTCCATTTAATTCTCATTACAATATCAAATCTTATAGTGAATTTAAAAAGATTGCCATCCGAAGGTTTGAGGTCTAGATGACGTGTATCAAGGAAACCATTGGATTATAAAAAAGTCCAACTTTTTCATTTGTATTTCCTATGTTTATTTTATATCTGTCAGTTTTACTTTAAAATATATTCACACTGCTAGCATTTACAACACAATCGCTGGATAATCTGTTCCATTTAGTTGTCATCCTGTGAGAGAACGAGTACTTTCTCAAATCCAATCTACACTATTCTTTTGCTAATGCTACTTTGTGCTCGCTGGTTCTACTAACAACTTTAAATTTGACGGTAATATTTATATCAGTATCTTCATAACCAGCTGTTTCAAGGTCTGCAGAAATGTTGAGGTTTATCTCAGGTGTATCTGTTTCCTGTCCCTTAGGATTCTGGGAGCCTACTACAGAGCCCAAAGATCGGCCGATGGTCGCAATGCGGCCAGGACCACAATGAGGCTGCTCGAAAGTATGATTCGACTCTCTCAAGGTAAGATTTATAAGCCATGGTGAAGCAGCTACCTTTTGTTATGATGGTATCATTGCACATTAAACAATTTCTTGCTCTAATAATAACCATTATGTTGCACTTTATTCTCTATTTACCTGGAATATAAAGTGTCCAGTATGAGTTGTGTAAGAGAACATCTTTAGTTGTTTGGTTTCTGAGATTTTAACAGGCATATTACTGTTAACAGGAGCGTGTTCAGAGAGGGTAGTCTGGGGGGGGGGGGCACCAAACCTCCACTGGTGGCTGAACCAAATTGGTGTAGAAAATTGTTTGCTGACCTTCTCTCCCATCACATTCTTCTCGCTGTCTCCTGTCTCGGCACTCGACTGGTCACATACATTGGAAGACGGGGTGGGGGGGGGGGTGCTGCTGAAAAGCACAAACCCTCAGGCCCCCTAGACACGCCTATGGTTAATTACTAATTAGAGCATTGAACCTGCTGTTTTATGAACTGATTTAATTAAGCCATATTATGTTTGCCAAGTTGGGAACCTGGCTATGTCTTTCATATATTACCTGTTAATGAAACCAAATTCTTCCATTCCCACTCCTGTCCAGCTCACAGTCGTCTGATGTGTCACGACACTGTCACAGTTCAAGATGCCATTGTGGCAGTGTCTGTTGTCGAGTCATCCATGCAGGTAAACTTCAACCTTACTCTGTTGTGAGAAGTTGTCTTCAACAGAGAGTATATTTATTTATGTAAAATAAATCCATGAATTATGTACCAATTATTGAAGACATGCTATTTATAGTTCTGAATTTGATTAAAGACGAGATGTGAGTAAACAGATTACAAGTGTCATGACATTACGTGTATACAGTTAACCAAATTGTTTTAAATTTTTGAACAGATCAGCCAGGGAATGATTAGTAAAGTGCTCCGCAGAATTGGATATAGCACTATTTAATAACTTACCTTTACTTTATTAATTTTTGTTTCATTAACACACGAATGACACTTCTTTACCTTGAGCACACTTGCATGATATTTGCCGTCTTCCTAACTATATTTTTGTAATTCATTTTCATGCTTGATGTTTAACAAGACAAAAATGTTGACCACCGTGTTCTCATTTTCAGGGGTCAGCCTTGCTGGGTGGGGTCAACGCCCTCCATACCTCGTTCCCTGCAGATCCTGACGAGGAGTACAAGTTACAAGGTAAATTTCTAGTGACTTCTGGTCATGTTCATAAAGTCATGTGTCACAGTGTTATGACTAGTGTTCATATCCAGAAGTCATGTGAGTTTTATGACGTCTGTTAGCATTAGTAACGCTTTCAGACTTTGATACGTAATATTACCTACCAAAAATAAAAGGCGTTGCGAATTTGATACATATTATTACGTACAGTGAATTTTCCGCGGAAACGGGGTGTTTAGGGGCGTCTATTCACGACTTTGCGGTAATGCCAGATTGAGAGAGCCATGTGCTTCACAGTAATGGCGGCATTGTTTACTTTTGATGGAGTTAACGCTACATTTTCTTCACAAATCATTCCGATTTGTCACGATTTCTGAGCAATAACTATGGCAGAAGTGTATTTTAATGCATAATTTGAGATCAAAAATGGCAACGAATTCGGTGTATATTAAGCTGATAAGAATAAACGAATGTGACTAATCACTAAGGAAGCCAATAGCACCCTTGTCTTCCTTAAACGCAACACCAGCAACTGCCCCAGACCAGTCCAATCATACTGCTATCAAACATACGTCAGACCAACAATAGAGTACGCTTCTGCCGTTTGGGACCCTGCCACCAAGCGAAACATCGATAAACTGGAGATGGTACAGAGGCGTGCTGCCAGATACGTCTATGGTGACTTGCATCGCCGCAACAGCCCAACCTCCATGCTCCACCAATTGCAATGGCAGCCCCTGGAACAGCGCAGATGTCTTGCGAGGTTTAACATGATGTCTAAAATTCAAAACGGCCTCATCGACATCCATGCCAGCCTATTATCCCTATACACAAAGCCAACATACACCTACCGCGCCACAGAACTCTTAGCTGAGGGGTGCAGAGGGCATCCATTCCAATTAATGGTTCAACGTTCCCGAACACAGGCTTTCCAACATTCCTTCATTATAGCCACAATACTACCCTGGAATAACCCAACCGCCCAATCAGTTCATTTCTCCCTCTCTAGATGCTTTCAAGCAATGCCTTGCCGACACTGCTGCAAACAAAGTCTAGCTAAGAGTGACCCCTGTTTGTTTTTAACTTGCACATGATTTTATAAATATTCACAACCACCACTGCCCACCTGCATACCTGGCTCACGCAACAAACACCACACCATCCACGAAGTCATCAGTAATGACGGCAGTGGATTACTGGGAGGAGAAGGAGAAGAAGAGGAGGACTAGAGCCAGTGCTTTCGCAACTTCAAGTAAATCGCACGGGGAATGAAGCCATCAAAGATGAACTTAGACACATCTTTTTTTATGTCCGATTGGCAACAAAATGGCATCAACCAACTTATACACGATGTGTTCAAACAAAGTAAACATTTTATATCATGATTCGGATTATGTGCCTGAACTTGGACTAGAATGACGAGTGGAATTCTAGTGTAATTGCTACATGGATTCTGCGATATGGGACCCTGTCAATGTGCATATACAGAATCCGCCAAATAATGCAACGACACCGACTGACAGTGTGGCAAATTGTCTCTGTTTTTTAGTGACATGTTCAGCAATTGCTGATTTTAATGACATCTGCTGTTGCAAACTAGTCACATTGATGCAGAAAGATATTCCAACATGTGCACACTGTGGAACTGTTCCAAGAAACTGACATAGTTCAGGAAACCGGTTTTTAAATTGTTCATTCATTTTTCACATTTCTATACATTTTTGTTGCTGCTTTCCTTGGCAACTGCCGTGTATATGTTTGTGTTTTTAGTAATAAAATGCATCTTGTTGGAAAGCTCATTTATTCAGCTTTCAGTAAATGTACAGTTTTATGGGTTTTCTTGTTATAATTATGTTGCTGTTGAGCAATCTTCTGTGCATGGTAGTGGAATATTGAATCCACGTGAGAAATAGGATTCCATAGAGCAAATTTGATCACGGAAATTAAAGTCTGAAAAGGGTAACCATCTATGGAGGTTGATTTTAATAAGAAATTACAGTATTGCACACGTCTTGAAAATATATTTAATCACAATTTATTTAACAGTTCTGTTACTGTGCGTTATAAAGTTAGATGAAGATACAGTTGATCGAGTGTATAGTAATGCAAGGATGATATTTATTGCGAACATAGATTGATGATTGTGCATAAAAATATGAAATTAATTGCATGTGACGATTTAAAATTAGCAATTTTTAGTAAAACAATTTGCATATGACTGGTAAGAAAAATTATAAACTTTTATTTGTTAAATGTTGTTGCAGGTACTGTTACACGTGTGTGTTCTGTCAGTTGAGTGGAGCTGTCCTTGCACCTGTAATTACTTAACAGATGAAGTTATCTGTTCCAGTTGACTTGATCCTGTCGCGACTTGGGCTCCAAGATCTCCTCTCTTCAGAACTTGCCCGACTCCAGTCACTGGAGCCTCAACATGAGACAGCAACACCAGCAAACTCAGTCAGTCGCAGAGCTACTCTACAAACACGCACACCAGCTGAGAAACACCACCGAGACTATGGGGAAACTTGTGATACGAGGGGAACAACATTGAAGACACAAGTAGCAACACATTCAGAGGGTATTAGAAACAATGTCATGGCTGTGAGTGTAGATGATCTGTCTTCAGTAGGTGGCAGCAGTGTGTCAACAGAACCTTCGAATAAACGTAAGACAACCGTTGACTGTGTGACACCACAACGAGAGACCTGCGCAGAAGGTGAAATCTCAACTGTAGCTGGGTCAAGAAACTTGGCAAGAAGTCGTCATTCTACTGGTTCGTTGCACAGTGAGTCGTCTGACAAAGAGAACATTCAGAACTTGTCATCTGTGCCAACACTGCTGGACACGAGTGGGCAGGAATCGCTGGACGACAGTTTGTTTGGCGGACCATCATGGGTTCCAGGACGACAGCTTGGCAATGTGACATCAGAAGTGGCCAACAAAGCAAGAACAAGTTCTCTCTTCAAGTTTGCACAGAAGGAAAGAGCTTCAAACCCTGGCACGAGTTCTACTTGTGGGATGGAGACTGCATCAGGTTCAGGGAATGGACAGGAAGTTCATACCATTCCCAAGAAAGGGGATGGGATGGGAAGTAGCCAACAGGTTGGAATAAATCCCAGTGATGGTTCATCTATAGGAAGAACTATCAAGAGTCGGATCAACATGGCATCTCAGAGGGATCGTTCAACAGACATGGTGGACATCAACAGACTCACCTGTAGTGGAGTCTGCGCAGTGATATCATACAGTGGTCATCCACAAGATGAACATGTCCTTGATGCAGGGACCAACTCCACGACAGCACAGAACACAAGGAAGAACCATAAGAAAGCCCAGTCAAGAACGAAATCAACCAAGAAAGATGTTCGGCTGGAGCACAGTGATGAGGAGAGCAACATGCAAAAGATGAGAAACTACGTGTCCAGATTCAAGTACCGAAAAGGAGGTGATAATGGAGATGGGAAACATAGAGGAGCTGTATTGAAAGTTGTAGAAGGCAGCAGTGTTACAGCAGACACAGACAACCAGGAAACAGAAATAAACAGAGACAGAAACCATGACACAAGCGACACTCATGCCAGCAATGTTCCTCGACGACGCAAAAAGAAACCTGACACAGTTGGTGACACAAACATTGATGAAAAAGTAACACATTTGACTGGGAAAAGGAAAGCTGTTTCCAGCATTGTTAAAAACGTACACAAAAAGCAAAACTCTAATGTTGATCCGGTCAGCTCAGCGACGGGACAGTCGGGGATAAGCCCTGGGGGAAGAATGTCAATGGGAATGACGTCAGACACGACACCAGACAGTGACATGTCAAGTGTCACTGACACTGATAGGAGGAGACATCATGTGTCGCGGTCGACGCTGACAAAACTCAGTAAGTTTTCCTTCTTAGGATCACCTGTGGTTAGTCCTCCTACTGGTCAAATGGGCACTGGTCAGTCGGTCACTACTACAGCTATGACAGACAAAGAACACCCGCAGACCACCTCAAATACTGTTCAACCATTATGCCCTATTAATTCACCTCCTAACACAGACCCACAGAAATGTTCCCAAGCAAGTACGACTTCAGTCAAACCAAGCGAGATGCCGACCAGTAATACAGCCCTATCCCAGAGTTCAGTAGGAAGTGGTGGCACCACCGTCTCCGTCAAGTGTAATAACACAGACAAACAGAAGCGACTTGCCTCCATGATCGACCAATCACCTGCCTCCATGACGGATACTTCTCTACATGTAGGCACAACAGAATCACAGTCTTCAAAACATAAGTCACCATCCTCATCACAAACCGGTCTAACTTGGCCGTCCACGCAAACTCCGGACACAGTCACGAACCACAACTCACAGGCAGGTGTGGACAGAACTATTTCTTCCGGGCGGATGGATACGTTGCCCTGGGGAAGTGCGGTCGGGAAGACGGGACTGTTCACATGTGGGGATGAGTTGGAGGAGGAAGACTTGGACTGGGAGGGGTGCTTGGAGTGGGAGGGGTGGGGGAAAACACCCTCCAAGAGGAGTAAGGCGACATAGAACTACTGGCATTGAATGGGTTGAGAATAAAGTCATTATTAACGCAGGGTTCTTGTCAGGTTTGTATTGTGTTTCGCTAAGTCAGTTCATCCTTCAGCCAACACACTTCTTCCATCTCTCTTGCTGCTTGGTTGTTAAACAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17855	MCM_lid	MCM AAA-lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031327	Family	Mini-chromosome maintenance protein	Interproscan
IPR041562	Domain	MCM, AAA-lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0042555	Cellular Component	MCM complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf7798_4.7 global RNA-seq network