Gene detail

Detailed information of PE_Scaf7650_1.2 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf7650_1.2	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	Superscaffold4	39334166	39338387	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf7650_1.2

AAAATACAAAACAGTACATAGCAAATATGTGAAAGACATTTACAAGTGTTGCGGCCATCTGCCACAGGGAAACAACATCTTCATGCATCTGTCACCGAGCGAGTATCGACGGGCCATTAAGATAGTCGAGGCGGCCATCATGGCGACAGATCTAGCGCTCTACTTCAGGTGAGTCGGCATGTGTGCACACGTGCTTGCGAGCTTACGTGCGTGCCAGATGATTACAAATCTCGGACATGTTTTTTTAGTGTTATATATAGCGAATGTATAATTTGGTTATCACACACGTGTGTCGCGGTGCTCATGCAGACACATTATATTTGCACAAACGTAATATAGTTTAAATAGGTTTATCTAGGGTTATATGTTACATTGGTCTTAGTTTCGATGGCTTAACACCAAAAAGTACCGTGTGTGTTCTTGTTTCTTGCAGGAAGAGGGGAGGCTTCGAAAAGCTTGTGAAGGCGGGCGAAACGAAATGGGAAAGTCCGGAGAAGAGGGATTTGCTACGGTGAGTCTTTGTTTCCGACCCGTTCATATGAATTGTCAAAACTTACCATTACGTATCCAGACAGTACATCAACATAAAATAATACCAATAAATTTATGAAAATAATTATTTTGGCAAAGCATAAGCCGATTCACTTGCCTCATTTGTACAAATTGTAAATGGACAAAATAACTATGGAAATTCTAACAATTATTACATCGCGGACAGCATTTGTTATTAGTTTCATACTGTAATAATAATAATAATAATAAGATATAACTTCTATTGCGCCTAAATCCTTTGAAACCAAGTTCAGAGGCGCATCAAAACAAAAGTATTGGTCAATCTCAAAATCCATAAGTAGTATTCCAGTTGTCAACAGATGGGTCAAGGCGCTATGGAGCTACCGTGGATAAGCAAGGTTGTAAAGATAAGTTTTTAAATGACGACGGAATTTTGTAATCTTTTCAACTGATCTAGACTTCAAAAGAGGTACAGAGCGAGAAAAACTAATATGTATAATTATGACTATTACTTGTTATTTTTTTAAGAAATATTATTATTATAAAAATACCATCACACCATTTCAGTCTGCATTTCCCACCAATGGAGATGAACAACATAATAAAGACCAACACAGTTTGAATGAACACGTATTGAGTAGAACGGTGTTTAGTCAAAAAACAATATTTACTACGGTACCAGCGCCAGCAGTTTGTCAATGTTGACATGACCGTTTGTGACCGTTTGTGACAAGTCGGCTGTACCAAGGTGACAAGGCCAACACGATGACATCGTGTTGACGGTTTTATGATAGTGTCGATGTCATGGTAACTGACATGCCGACGGTATCATGGTGGCAGTTTGTGACTTATCAACTGTAACAGGATGAATGTTTGTAACATATTGACAGTGTCATAGTGGCGGATGTGATATATCGTGGTGACGGCTTATGACATATTGACGGTATCATGGTGACTGGTTATGGCATATTGACGGTATCGTGACAACGTGCTGTGTGTGCCAGGTCGATGATGATGACGGCGTGTGACGTGGCGGCCATCACGAAGCCGTGGGAGATTCAGAAAGACGTCGCACAGCTCGTCGCCAACGAGTTCTTTGAACAAGGCGACCTTGAGCGTTTCAAACTGCACCAAGAACCCATTGTGAGTTGTCAAGGCTTTCGTCGAACCTTCATGGTGGCTATCTCTCGATCTCTCCTCTCTTTCTTCTCTCCTCTCTCCTCTCTCTCATCTATCTCCTTTCTCTCCTCTCTCTCTCCTCTCTCTCTCCCCTCCCCCTCTCTCTATATATCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCTTTCTCTTTCTCTCTCTCTGTCTCTCTCCCCCCTGTCTCTCTCTACTCGTTGTCTCGCTTTCTCACCCTGTTTATCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCTGTGTTTGTGCGTGTATGCGTCTGCGCGTCTGCGCGTCTGCGCGTCTGTGTGTGTGCGTTCGCGCGCGCGCTCTCTCGTGGTGGGTGGGTGCGTTTGTGTGTATACATATATAGTGGCACTTACAAATTAAGCAGTGTATTGTGTTGATGTAAACGACCTTACTTTTAGAGGTTTCAGTGTAAATATATTGCGATGGTAATCATTTATCAAGCATAATAGATTTTTTACGGGAACAATAAGCCACCAAACTTAGTTGTGTGTGTTTGTTTTAACTACAGGCAATGATGGATCGGCAGAAGAAAGATGAGTTGCCCAGTATGCAAGTTGGATTCATCGATTCCATCTGCCTCCCGGTCTACAAGGTAAAGTATCATGTAGAGCGAGCATGCTTCTGTGGCATGGCTTGCCCGGATAAATCCAAGCCAGTCCCGTTCTCATCACATCACATGCCACTTTCATTTATTTATGATGGTTGGCGAATATAGGTTTGTCGCTAGTATTTATAAAACACACATACACACACCCCATGCATACACACATAAACAGACGCGCGCGCGGGCACACACACATACACACACACACTCTCTCTCTCGCACACACATACACGCAAATACCACACACACCACACACACACCACACACACACGCCACACACGCCACACACGCCACACACCACACACAAACATGCACACGCTTTCACATACAAACACATACAAACACACACCACACACACCACACACACACCACACACACACACCACACACACAAACACACACAAACACACACACACCACACACACGAATACACACACTCTCTTTCTCTCTCTTTGATACACACAATCACATGCATGAGCGCACACAAACACACATACATACACACACACAAACACGCTCGCGCTCACATGATTTCACATACAAACACACCACACACACACACACACACACACATACACACACACGCACACACACACACACACGCATACACACACACTCTCTCTCTCTCTCTGACACACACAATCACACGCATGAGCGCACACAAACACACACGCACACACACCACATACATACACATATATCAATCATTACATCACCTAATGTATCGACGTCACTGTTTCCTATAAACGCGGTCGCACATCTCCCATTTCTTGGTGTACAGCACCTTGCCCAGGCGTTTCCTGCACTCAAGCCCATGGTGGACGGATGCCTTCGGAATCGCGCGAAATGGCAAAGTTTGGCCGAAGAGTCCACCGCCAACGGTTAGCGAGATGAGCATTTCGATCCGTGCGTGTTTGTCAAGTATGCATCATCAATATGTGAACGCCACATCAAGCCGTCCTTGTTTCTGCGCATTCGCTTCGTCTTGTGCCGCACGTTTTGTTTTCAGATAATCATTTGTTTAAAGTCAACTTGTCGCAAATAGTACAAGTAAAAACTGTGCCGAGAAATAAATACGACATGTGTATAACAGGCTTTGAACGATATCGTTGACTTAAACATTCAACGATAGTTTCATGTTGGTTTGTTTGTATGGCATTTTCGCCAAATTACTCGTGTGCTTAGGGAGTTATGATAACAGATACTCGACTTGCTTAAAGTGTTGTTGGTGTCTTTTCTCATAATTACCATAGCGTTTCGCAAATTTGTACATAAAAATATACAGTGTATTACAAAGCATACAATATATTAAGCTTACTATACATGTTATCGAGATAAAAATCCGAGTATTTATAATTTTAAGTCAATTTGCGACAAGTTTGCTTTAAAATGTAATCAGTATTAACTTTTCTCGGTACAGTCGTTTCTTCGAACAATCCGTGCAAATACTTCTGTCGCAAAATAGTGTTTGCGTGAATCGTTGCGTCACCACAATAGCGTTTTTGTTACGCAATCAATTATTAATAAACTTACAAAAACCAATACCTCCTTATTTCGAATTATGCAATAATCACGTGTAAACACAGCTTTCGTGACATTGGTGTTTTCACGTCTTCTGTGTGTTGCAATCTCTGAATTCCACTAAAACGCCCCGTGCCGTTTGCGGACCTGCCAAGCTCCAGAATACATTCACAAACGTAGATCGCATTTTAGGTTAACACTGCGTTTTACTAAACTGAACGTAACTTCACTACATTACGGCCAATACATTGCAGCAATGACAACGAATTTCAACCGCCATTGAATATAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00233	PDEase_I	3'5'-cyclic nucleotide phosphodiesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002073	Domain	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	Interproscan
IPR023088	Family	3'5'-cyclic nucleotide phosphodiesterase	Interproscan
IPR036971	Homologous_superfamily	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11347	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004114	Molecular Function	3',5'-cyclic-nucleotide phosphodiesterase activity	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf7650_1.2 global RNA-seq network