Gene detail

Detailed information of PE_Scaf6297_0.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf6297_0.7	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Superscaffold5	3449484	3454820	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf6297_0.7

TGACTTTCATCAAGTGACCTCCATCAAGCTTTGTCTCGTCAACAATGTTTGTTAGTAATATATGGGCATTACATGACGAATGCGGCAGGATACCTGCCGAATCAATCTTCCCAGCATGCTGTTCTCACTTCAACAACTTTGCGTTATGTTTTTGTCATCAAGGAAAACATTTGGGGTCCAGAATTTAAACAAAATATATGACGGAATGTCCGAACGCTCCACACGTTCGACATCTATCTACCCACGTCATGGTGGTGTGGTTATTGATGTGCACCACATATTTCGTTGATTGCTGTGACCTTGCCATGACTTTGTTGCAGCATGGAGGAGTGTGAAGCGCTGTGTACACGCCTCGCGATCATGGTCAACGGACAGTTCAAGTGCTTGGGCAGCACCCAGCACCTTAAGAACAAGTTCGGCGAGGGTTTCACCCTCATTGTCAAGGTTGGGCACACGGCTGACAGTGACACACCCAACACTAAGCCCATAATGACCTACATCAAACAGACGTTCCCCGGCAGCGTTCTCAAGGATGTCCACCAGGGGCTGCTACACTATCATGTTACTGACACCAACGTTCCATGGGCGTCGTTGTTCGGCTCGATGGAGAGGGCAAAGGTCATGTGTAACATCGAGGACTACTCCATCAGCCAGACGACACTCGAGCAGGTCTTTATCAACTTTGCCCGTGCACAGATGGCGCCACTCGAGGAGCGAGCTGGACGATCGCAGAGGTGCTGGTCGGCATGTGGAGCATGTTGCACCACCATGTGGGGCGTGTGCTGTACTAATTCACACGAGCGGCGACGTTCGATTACTGATGATGACGCAACCCTGATAGTTGCCTAATAAACCTACGTCCTGATAGTGGCCTATTGGCTCTACATCCTAATAGTGGCCTTGTGGCCCTATGTCTTGATAGTGGCTTTATATCCTAATAGTGGCCCTATGTCCTGATAGTGGCCGTACATCCTAATAGGGGCCCTATGTCCTGATAGTGGCCCTATGTCCTGATAATGGCCCTATGTCCTGATAGTGGCCCTACGTCCTGATAGTGGCCTAGTAGCCCTATGTCAGTAAAACACATTATCCGTGTTTTTAATATGTGATTTGTAAGTGTGACTTTTATGCGATACTTACTTTATCTCAGTTATATTTTAGGTCATTAGGTAATATTTACACAGATTTTGTATAATGTTAGTTTGTCGAATGGCTGTGTTTTGTGGGATGCAATGTTGTAAGTCGTGGATAAAAGCTACAGTCTACATTTCAATAAGTTATTCTGGAGCTATTGAATTATGATACGCAAGACATCTCATTACTTTGGAGACTTCGGTAATGTTGCAGGACCTTCACTGTATTAACCTTTTACACGTCATTTAAATGTTCCTTGAATCGTCATTATTAGCTGAATGACTGTTAATTTATGATTTTTGCAATCCGGTTAATAAGCAGTAATACAAATGATTAATAAGTAGTAATTCACCGGATACCTCCTTAAAAGGGCCATACAGTGTACAGCGTAATACGGCCTGGATCACGTTTTGTGTTAAACAATCAATGAATTTTAACTAAAGAACTATTTTATTTGTTGCACAATGTACAAATATTGCTGCACTAATATGTCCTATCATAATAAGCTGATATGACTTGCTGGTGTAAACATGTATAATTATTTAGTTTCTTATATATTATCAATACATTTTATGTAATCATGGGGAGTGCACGTAATTGTGACGCTGATGGTATATTAGTTAGAAATATAACTTGGTGAAATGTTTTTCACCCGTAGTTGACTAAATGATTAAATGCATCTTCCAATGAATGTGATAATTGAGAAACAAATGCAGTGATAACTAACAAATGTATGGAGTTCATGGAACTGTTCTCCTGCCTATTTCTGTACCTTCTGTGGCAGAACCAGGCTGTCATTCAAAAGAAATGAACCGAGTCTCTTTAACTGCAGGTTTACATGTTTTATTTCCATTTATGCATACACAGGTTGTTTCTCTCCTCGTCGTCATTCTTTGGTTTTCTTCTGGACTTGTTCTAAGACAGCAGATGTCACCTTCTGTACAGCCGTTCTTGTGGCTGACTCAGGAAAGAGGTCAAGGAAGTTCTTGCCGTCTTCTAAACTCTGTGTTAGCTGCGGGTCTAGTGGCACACACCCTGTCAAACAAACGGTAGCATGCGTGTTATTCTCTAAAAAGCATGATTTCTGCTTTTGCAACATAGCATTTAAAAGGTGGGTGAAGCTGAGATGATGTATATGTTAAGTACACGTTTATCAAAGAACGTAAATACGAGAAGGCCAACTCTGACACGGCAAGTGCTGCTTTTATAACAATAACGTTCATGAAATTGATCAACATATCACAACACTAGCATCAGATCACAAAGCTCATCTGACATTTGAATAATTTTTCAAAAAAATTGAGCACACATCGACATAGATATATATTCCGTGTATTTATATTATTGATTTTGAGCTTGGAAGAGGTTGGTTTTGCGCAGTGAATACAGATAATTAACACCTTTATATACTTTGTGAATGGCAGAATATTGGCAGAATATCAAACAAAATTGAAACGGCCACCATTCAATGCAACATGGTACTGCAATATTGTGTCTGTTACACATTTTCATGCCAGCTAGCCTTCTTGGTCTGTGTTTATACAGAATGGGTTTACTTACCAAGAAAGGGCACGTCAAGTTGCGTTGCTAATGCTTCTCCACCTCCTTTGGAGAATACGTTACTGCATTCCTATTGGACAACGCACATCACATGTGATAAATATTTATTAAACTGTTATATATGGCAATGAGGCCAACACACATGCAAATGTAGTATTCCAGATGTTATTGTTGGTGTTGTAATTAAAAGTTTACTGCTAAAACTTGACTTTTCATTGTCATTTTACTTTATACTGCATGTGTTATTTTCAACCAACTTTGGTAAATTTATTGACTCAAAGAATTGGTTAATTGAACCACATTTATTTGTGACTTCAGGATCAGACTGTTCCTAATTATTTAAGATAATGTTCTCTTGGTATTGGAATAAATATTTTGAAGACATGCTGCCCACCAAATTGCATTTAATAAGCTGGTCGCAATCTGAATGCCGAGTCTACAAAATTTTGAAATTGTAAACAAAACATTCAAGTTTGTAAATAGCCAATATTGGCACATTACGTAGGGATGCATCACAATCTGAAAGTACCTTTGATGTTGGCTGATTCTCACACTCCTGGCCACAAAGTGGGACAAAGTACAACTGTAAAAGAAAGAAGTACTCACTGAGCAATGAGGACAGACGAATCCACTCATGTTCTCCACAATTCCAATGACAGAGATCCCTGTCTTCTTGCAGAAGGTTGCCTCCCTACGCACGTCTCCTGTCGACACTGCCTACAATCAGATGCTTCCCTGTCACTGCACAGTTGGGTCTCGGAGAAAAGACAACTACAATCATTGACACAATAACAGTTAGAATATATGTGCGTTATTCTATATGAGCTCTTCTTCTGAATATCTCTACCAAGTATGATGTAAGATGCCACTATTGGTTATATTCTTTGTCAGACATTGCAGAGTTGTCCTTCTGGTGACTTAATGAATCCACAACATGTTAGATAGTTTACTTTCCATAGTATAGGTAATGAAGGGACTTATGTTTGTTAGGTGAATGTTAAGTGTTAACTGGTGAGGAGTCGGCCAAAGTGGGCTAGACACATGAAGTGAATGGGAGAGGAGCTGTTTGTGAAGAAGGTGGGCTAGACACATGAAGTGAATGGGAGAGGAGTTGTTTGTGAAGAAAGTGGGCTAGACACATGAAGTGAATGGGAGATGGGCAGTTTGTGAAGAAAGTGGGCTAGACACATGAAGTGAATGGGAGAGGAGTTGTTTGTGAAGAAAATGGGCTAGACACATGAAGTGAATGGGAGATGGGCAGTTTGTGAAGAAAGTGGGCTAGACACATGAAGTGAATGGGAGAGGAGTTGTTTGTGAAGAAAATGGGCTAGACACATGAAGTGAATGGGAGATGGACTGTTTATGAAGAAAGTGGGCTAGACACATGAAGTGAATGAGAGAGGAGTTGTTTGTGAAGAAAGTGGGCTAGACACATGAAGTGAATGGGAGAGGAGCTGTTTGTGATGAAAGTGGGCTAGACACATGAAGTGAATGGGAGAGGAGTTGTTTATGAAGAAAGTGGGCTAGACACATGAAGTGAATGGGAGAGGAGTTGTTTGTGAAGAAAGTGGGCTAGACACATGAAGTGAATGGGAAAGGAGTTGTTTGTGAAGAAAGCAGAACAGAAGATGACCAGAAAGTGGACGGTAAAAGAAGAAGACCAACACTGGGAGGGGACGATTGTGTAATGAGACATTTGGTGGGAGTGGAGAACATGAGCAAGGGGGTGGAGACAACTCGAGAAGACAGAGGAGGGGGTGGAGAAGACTGGTGAGGACAGAGAGGGGTGGAGAAGACTGGTGGAGACAGAGAGGGGTGGAGAAGGCTGGCAGAGACAGAGGGGAGCGGAGATGGCTGGCAGAGACAGGGGATTGGAGACGGCTGGTGGAGACAGAGGGAGGTGGAGATGGCTGGTAGAGACAGAGGGGAGTGGAGATGGCTGGTGGAGACAGAGAGGGGTGGTGAAGGCTGGCAGAAACAGAGGGGAGCGGAGATGGCTGGCAGAGACAGGGGACTGGAGACGGCTGAAGGAGACAGAGGGAGGTGGAGATGGCTGGTAGAGACAGAGGGGAGTGGAGATGGCTGGTGGAGACAGATGAGAGTGGAGATGGCTGGTGGAGACAGAGGAGAACGGAGATGAGAGTGGAGACAGAGGGGGATGGAGATGGCTGGTGGAAACAGAGGGGGGTGGAGATGGCTGGTGGAGACAGAGGGAGGTGGAGAAGGCTGGTGGAGACAGAGGGGGTGGAGAAGGCTGTTGAAGCAGAGGGAGGTGGAGATGGCTGGTGGAGACAGAGGAGAGTAAAGACAGAGGGGAGTGGAGATGGCTGGTGGAGACAGAGGGGACTGGAGATGGCTGGTGGAGACAGAGGAGGGTGGAGATGGCTGGTGGAGACAGAGGGGAATGGAGATGGCTGGTGGAGACAGAGGGAGTTGGAGATGGCTGGTGGAAACAGAGGGGAGTGGAGATGGCTGGTGGAGACAGAGGGGACTGGAGACGGCTGGTGGAAACAGAGGAGAGTGGTGGAGTTGGCTGTTGGAGACAGAGGAGAGTGGAGATGGCTGGTGGAGACAGAGGAAGGTGAAGACAGAGGGGGGTGGAGACAGAGAGGAGTGGAGCCAGAGGAGAGTGGAGATGGCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR026082	Family	ABC transporter A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf6297_0.7 global RNA-seq network