Gene detail

Detailed information of PE_Scaf5090_0.9 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf5090_0.9	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	Superscaffold1	47042696	47049467	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf5090_0.9

ATGTGGGCTGAAAGGTAGGCTTGAGTAAATAACGGTTCTATTCAAGTGGCAGAGGCTTCCCATCCAACACAAAGGGAATTAGCAGGCAGATGTCCTTAATTGGCATTGTGTGTAAATAAATGTGTCCACTGAGAAAGGCAATGTCTGACTGATCTGAATTTGGACTTAACGTTTGTTGGCAGAAATTTTGCAATTGGCAGAATAAAAAGCATAGTGAGTTTAGTTGCAGTTGTTTCAGTTAAATTTGTAGCGTGGTTAAAGTCTGGCCTGGGGTCAATCACTTCGCAATGTAATATATTCCTATTACTGAGTTTCCTTCCTATCTCTGGTATTATTACTACTACATACTGAATGGAACATATTGCATATTTTTCATTTAATATGTCAGTACTGTATAGGAATGAAAGACAAAAGCCGTGTTACTGCCACTTAACTTGGTGGATTATAATCAGGGTAATTAAACCATAATGCTTTACTGTTGTTTGGTGGACAGTTAATTATCAGCACAACTACAAATACACCACCATTATTAAACATAAACGTAGCGTTCAATGTACTTGACTAAAATTGTCAAAGTACTTGGTACTTGTACTTGCCTATATTTTTTAGATGAGTACTTGTACTTTGAAAAGTTGAAAGTACTTGTATTCAACTACATTGTGCATGTACTTGACACATCCCTGCCTGCAGTACGTGGTATAGTCGTGTCCGGAGGGGGGGCCGGGGGCTGGGAGGCACGTACCCCCTAGACCTTTGGAATTTTGTGTGCCCGTAGACTTTTTGAATTTTTTGAAATTTTCTACACCATCTGGTTCGGCCACCAGTAGAGGTTTGCATCCTCGCGCGCCAGGGGTCGCTGCTGCCGATGACGTCAGTGACAGCCAACAGTACCCCATTAGGCCTATATCAATTGCAGCACTCGATGCTCACGTAAACATGTTCCTGCAAATCAGGCACGTGCTCATCAAACATATCTGGAAATCACTTCTTTAAAAGAGTGGACTTATCTACCTCCAAGCATTATTTCATGTAAATCACTTAATTTAGTGCAGAGTAACCCGGCCCATCCGATATCTAAAAAAATAAACCAAACTTTTATGTATACATGCGCAATGGCGTGATGTGTCCATTTTACATTTTGCCAATCAGAATAAAGATACACCAAAATTCTAGAAATAAATACCCCTTGCCAAAATATTGGGGGCTACTCCTATCTCATGCCCTTCCCACCGATAATATCGGGGGACTGAGCCCCTCGCCCCCCACCAGTCCTGGCACCTATGACGATCCACTGGTAATACATCTCTAAAATGGTTAAATGTTCGTCAAATATTTTTTCTTATGAAATGTACTATTATGTATAACATTGTAAATGGTAAAACTCCAACTTATCTTAAAAAGGTAACTCCTGGCATATGTCACAGTTATTGTACAATATATAAATCATCCAATAATATCTTCCAGACACATAGTCACCAAAAGTCTCTAAAATATAATGGCACATCATTGTGGAACAACCTACCATCTAAAGTAAAAAATAAAAAAACTGTTGCCAGTTTCAAAAATCGATGTGTTCTGTATATCATCGGTAAAAAATAAGTATCAGTGCCTGTCTTTCATATTATAAATATGTTCGTTTTAAATTGTATATCATACCACATTCTCATATTTTGATTACGTATTGTGGCATCATCACTTTGGGGGTCTATTTAACATCAGCAAAATGCCCGGGTGCTGATACCACAACTCCACCATTATTCTTCAGTATTATATTTTCATCCAGTATACCTGCTCACTTACTTTTACATACATATTTATTATATTGTTTACATATGTTAAGTATGTATTCTGTTTTTTTATCATAATGTATGCATGTCACCACAACAAAAACAGTTGTAACTGAATGTAATATGTGAATAAATATAATGTATCTTGAGTGACGAGATAATCCTAACTTGGCGTAGATGGTTCAATGCGATTCGGTGCGGTAATTAGTTGTCGAATCTTCTGCGCAAAGCTGTTGAGCACTTCCGTCCTTTTCAGCCAGTTCCTCTTCGGGTGTGCGAGTTGTTAAAAACCGGGCACTTAAAACCTATCAAATAGACATTATGGGGTTCGGAGATTTAAAATCAGAGGCTGGCATCAGCACACTAAATGGATATTTATCAGATAAAAGTTATATCGAAGGGTGTGTATTTCATTTCGGCCTATTTTATATATTTTCGGTGGAAATATTTTGCCCACGTAGCACACGTGTGTTGCGCTGTCAGTGACACATGACATGATGACAAAAATAAACGAAGACGAAGTAGCTATTCGCCTAACCGTTGTGCAGACACCCCCGCAACTAATGCATAAGAGCTGTATATGAGTAATCACACAAAACATGCAAATAGTTCGCAATCAATTATCAAGGGCAGTCCTGACAAAACACGTCAAACTCAAATGACAAATTTGATAACTTTAAAACTAAAAGTCAAAGATAATGCACAAGCTGTACAACAGAAAGTGCATGAAGTCAAAACCTATTTTACAATTTGAGTGGATTCTGAACAGTTGATAGATAAGTAGGCATAGCCATAGATGATAAATGATTTGATTATAAATAATTTAACCGCACTACAGACACAGTCGGGCGGATAAGATAGATCGTTAGCTGAAAGGATACCCAGGATAACTCAACAAGCCACAACGATTAGGCAAATACCGCTTCCCCTAACAGAATTAACTGTTTCATGGGACCATTACATTGTGCTTAGTACTGCATACGGCTAGGGATAGCAGTTTAATAACAAGATTCAACATATTAGAAGATTACATGTTTGTTCACAAATGTAACATCTCACCCATTTTAATGTATAAATTTATTGAAATGGCTTAAATTTATGTTTTATCGTGGATGACGTTTTGGAATCTTGATCAAAAGTCCTACTAGTAGGCTTACTAGCTTTCACTGGCATTAGGAGGATTTAATCCCCCAGTCCTCTTGACCGAGAGCCCTAATTACTTGAATTTAGTAATTATGTGATTATCATTTTAACTTGTTGCAGCTACCAGCCATCCCAGGCTGATGCCGTTGTATTCGGGGCGTTGAGTTCTGCCCCTTCTGAGAAGTTCCCAAATGCATGTCGTTGGTACAAACACATTTCTTCATACGGCTCGCAGTGCAACAGGTGAGGCACAGACACGAGTCTATTGTAGCTTCAAATAACAGTTTTTCATGATATGTATGGTATGATTCATACTATTCATGACACAAGCAATCACAAAATAGATAAGTTATTTTATCAGTTTGAAATTTGTCACAAATGTAAATTGAACAAAACGTGAAACAGTATAATTGGAAAGATAGATGACTGGTAAGTACACACATGGTTTTTCTTACTATTCTGTTGGATACAACAATTTATAATGTTATTTTGTATAGATGTTTCATTGTGAGCCTGGGGTCAGTTTCACAATGATGAACCATTCATAAGTAAGAATTAGATACAAACTTTTGTACAAAGTAACATACATAGTAGAGTGGCAAAATTTTACATGGTGAGAAAATTATTTTTGAAATCAACCATGCATATGGGCTAAAAAGGTGAGGTTGGCTGAGAAAACAACTATGGTAAAATTTCAGAAAAATCCATTTAGAGGAAGAGACCTCAAAGCACCCAAAGTTTTTGTAAAACCACGAAATAGGGATACATTTAAAAACAATATATCAGTATCTACTTAATCTTTTTAAATATTTTTTTTACTGTGCTCTAATTTCTATTCATAATAATTATGTCAAGACAATAGAACAATCAATCAGGGTATAAATCACCTACAATTGTGAAAATTAGAAAACTAAGATTTTGTTCATTTTAGAAAACAGTAATCCATCATAATTGGCTACATTATATAGATAATTTACTCATTATAAATCACGTAATAGTTTGTTTTATTGCACTTAGCCCATTTTTTATTATGTAGCAGTTACACACCACAATTTAAGCAGGCAGATTTTTTGTAACTAAGCTCTGTTTAACGTCGCGCAAGCAGTAACTGTTGTTGTTCATTGCACGGGTGCTGCTGTAGCCATGTCGGATGCACCGCTTCGTACTAGATCTGCAACAAACATGTGGTTAATTGGGCAACCGCTTCCTTGTATCGAGAACCTGAACCAACTGCCTACAATTGGTGAAGTTCTGCAGCAAGTTTTCTATGACTTGAAAGTGAAGAAGCTGACGCTGCCTGCAAGCTGCAACAATGCGGTAGGCGAAGTGCTGCAGGTTTGGCATCTGGCTAACATTCCGATCACAGGATGAACAGTCGGATTCTGGTGGCAAACCGGACGTTGATGCAGCTATCTCTATCAGCAAATATCACCATAAATATCTAGATTTATCTGGATCATTGCAGTCTTCTGAGCGGGTCGAACCAGTTCCTTAAACCAAGAAGGTAGCATGGTGCTGTCTTGTTGATGACCCGTTGTTTGTCGCTAGCTTGGACAGAACACAAACGATATCATGTCAGCGATGCATATTGTGACACCTGCATTGACGGCTGCTGGCGTTGATGTGTCAAAACTCACTCTGTGACACAGCGGGTAGAGATGGCCGCGTCGCCATCGCACAGGCCATTAAAGATAATTTCCACCCGGATGTACCTCTCGTCGCACTTTTTGATGGAAAATTAGTACCCAACTATCCCGCTCTTCAGTTGGTTCAAGGAGAACTGGCCATTCGTTGATCAAAAAAAGTACAATTCTCTGCACAGTGAGACAACTAGGTAATCTGGGTGTGCCTTGACTACACACGAGAAGCAATGGCTAGAGAGGCATAAAGTTACAGCAAGCAAGTTCCTAACAGAACAACTTCGCAATAAGCACCCACGACAGAACTACTTCGAGTTCATCCTTCTGGCCATCATCTTGTTGGGTGGTGCACGTGACTCGAGATATCAGTTCAGCCCACCAGGCGCCTACCACCTTGCTCGTTGGATGGCAAAAGGGATCTACTGCTTGAAGATATTCGCCTTCCGTGAGCAGTTCGAGCTTACTAGCCACGAACTACAGACTCTACAGCACATCTGCCTGTTCACGATCACCATCTACATCAGAGCATGGGTAGATGCAGCCAGCATCAGACGTTCGTCTATCAACGACCTCTGCCTCCTTCGTGACCTGGAGAACTTTGATGAAGTGGATGGTGTGATTGCACAGACAACAGCAATGAAGATGAGGAGTCATCTCTGGTACCGCAGTGAAGACCTAATCTCTCTGGCGCTCTTCTCTGACCGTGCCTCTGCAGACGAGAAGACGGCAATTGTAACCGCCTTTGTGAGACCTGCAAAGAAGAATGACCTGCGGCGGGTGGAGGCGAAGAAGTGTTCTCTTTCAATGAAGTGCACCTCGCCAATTTCGCAACGCAACATTCGCTCAACTTCTTCACTGCTCTCAACAATGAATGCTGCTTTCTCAACAGCAAGCCTGAGACGTGGCCCAGCCACCAAGACTATCTTAACGCAGTGAAGACTGTCTCTGCTTTGCGTGTTGTAAATGACTGTGCAGAGAGAGCCATCAAACTGGCGACGGATTTCAACCTGGCTCTCACAGACGACGAAGAACAGCGCCAGCTCATCATCTAAGTCTTAGAGTCGCATCGAGGGCTGATGCCTCAGGCTACAAAGTCGAGGATGATGGATCTTTAATAAGGTATAACAGCTGTTTTGCTATGCACTTTTCATATGTTGGATTGTGTGTATGTTTACCATATTACAAATGCTCTGCCCAGACATTTCAAATGTTCATCCTGGAGTGCAATAAATCTGTTTCACTAAAAAGGTATGTATTGAGCTAGTTTTTATTAGGGGTGATACATGTATGATTCATAGGTCACAGTGATAGTTTTAGTAAAATAGGTTCAGTAGATTTTGAGATATTTTGGTGTTCTTAAATTTATCCCTATATTGTGATTTTACAAAAATTTGGGTGCTTTTAGAGGTCTTTTCCTCTCAATGGTTTTCTCTGAAATTTTAACACAGTTGTTTTCTCAGCCAACCTCACCTTTTTAGCCCATATGCATAATTGATTTCAAAAATTATTATTTTTTGGCCACCCTAATACATAGTTACCTATAATTGTTTGCAATCTTTACAATTGTTCCGAGTACCGTAATCCACTTAAAAATCTGTGCTTAATCTTCTTGAAATCAATGGATTGGAATATAAAATGTAATTGTGAAAGACAATAATAATAATAACAGTTATGTAAAGAGTATTGTAATATTTGTATTAAAATAGCCAGAAACTGCTTGTAATACCAATTGAGAATGAAAATTATTTCTTAGAACTTGGACGAAGTGGATATATTTTCTGAAAGAAATTGTGACATAGGTGTTCAGTGCCTGACGCTTACAGCCTGTTGTCTGCTGTAGTTTCCCGGGCACGAAGAAGTCTGTGGACAGCTATGGCGGGTCAGCGGCGGCTGCAGCAGTGGCTGGCGATGATGACGATGACATTGATCTGTTCGGGTCGGACGAGGAGGCAGATGCGGAGGCAGAGAAGTTGAAGGAGGAGCGCATCGCAGCGTACACGGCGAAGAAGGCCAACAGTAGGTGCCCTTCTCTTAGTCGTGTCCGTCCTACGTAAATCCCTTGCCATGCTATAGCAAGTTGCACTCACCTGGGTGTTGTTTCTGGCATACAAAATTGTTCTCTAAACTCCCACTAATTTCCACCAAAAATCTGTGTCGGAAATCCCCTTATAAAAATGGAATGGTGGAATAAATTGTCACTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10587	EF-1_beta_acid	Eukaryotic elongation factor 1 beta central acidic region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001326	Conserved_site	Translation elongation factor EF1B, beta/delta chains, conserved site	Interproscan
IPR018940	Domain	Elongation factor 1 beta central acidic region, eukaryote	Interproscan
IPR049720	Family	Translation elongation factor EF1B, beta/delta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11595	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005853	Cellular Component	eukaryotic translation elongation factor 1 complex	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf5090_0.9 global RNA-seq network