| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| PE_Scaf4843_5.3 | LSM1 | Superscaffold1 | 15414304 | 15418966 | - |
| CDS | |||||
| PE_Scaf4843_5.3 | |||||
| Transcript |
| PE_Scaf4843_5.3 |
| Protein |
| PE_Scaf4843_5.3 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01423 | LSM | LSM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001163 | Domain | Sm domain, eukaryotic/archaea-type | Interproscan |
| IPR010920 | Homologous_superfamily | LSM domain superfamily | Interproscan |
| IPR034103 | Domain | Sm-like protein Lsm8 | Interproscan |
| IPR044642 | Family | U6 snRNA-associated Sm-like protein Lsm1/8 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15588 | LSM1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005688 | Cellular Component | U6 snRNP | Interproscan |
| GO:0016070 | Biological Process | RNA metabolic process | Interproscan |
| GO:0046540 | Cellular Component | U4/U6 x U5 tri-snRNP complex | Interproscan |
| GO:0071011 | Cellular Component | precatalytic spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for PE_Scaf4843_5.3 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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