Detailed information of PE_Scaf4406_3.14 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf4406_3.14SNRNP CORE PROTEIN FAMILY MEMBERSuperscaffold103560639135617160-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR016654FamilyU6 snRNA-associated Sm-like protein LSm2Interproscan
IPR047575DomainSm domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR13829SNRNP CORE PROTEIN FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:1990726Cellular ComponentLsm1-7-Pat1 complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf4406_3.14 global RNA-seq network
TOP