Gene detail

Detailed information of PE_Scaf2610_2.32 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf2610_2.32	ZINC FINGER PROTEIN 142	Superscaffold7	60687478	60691293	+

Gene Structure

More details in Jbrowse Sequence

CDS

PE_Scaf2610_2.32

ATGCCAGTTTTCTTGGACACTGAGGGCGAGGTCTCTCGTGTACAAGAACAGTATGTTCTGCCACCAGCGAGTGGACGGCAGCAGGAAACCACAGTAGCTAACCAAATAGGTGGCGCTCCGCAACTTGCTCCGTCGTCTGAGGTGGAGAAAAATCCGGAAGAAAACAGCCCAATTACAGGGTATGTTGGTGATAACGTCACTGGTGCACTCATGTTGGAAACCGCTCCAACGTGTAACAAAGACTGGAGCCAGAAAGAAGAGTGTGGACATGATAAGTCGGCCACACATCACCAATCTGGTAGTGCTATTAAAGATGAAGCCGCCGTGTCCGAGGTGCACAGTGAACGACTGTTCAAAACACTTGCAAAAGGTGACGCACCGGCGACAACTGCCGCGTTTGTGTTGCACGTGACAAACCAGGAACCGTGTAAAGAAGACCGTATGAAGTCAGATAACAGTGTCATCGCTGTGCCTGACTCTCCAAGCCACTGTATGGTAACGAGAAAGATAGACTCCAGACGACCTTCAACGCACAAACCGGTACCGTCGAATAAGCGCAACACGTTGAATCCTAGAGTGACAGTCGACGTGCCTGTGTGCGACCGAACTATGGCGGCTCACATTGAGAGCGAAGTTGGCATTTCGGTGCTGTTCTTCTGCAAGAAGTGTCGCTGCTACAGTTCGACGTCGCTAACTGAAGTGTCGGACCATGCGACCACCTGTGATACGACAGCAGTGGTTCCGGTTAAACGGAAGCGTGGTCGTCCTCGGCTGACTTGTACGGCGGGCCACAAGGCGGTTGTGCAAGATGTAAAGTCATCCAACGCGATCGTTGATTCGGGCGGCGGTGACGGTCGGAAGCGTGCGGGAACACCCGGCGAAACAACCAATGAAGATGGTTTGCCGCGTAAACGAGGACGCCCACGCCTCCAAAGGACTCGCAGCGGTGACGAAGACAGTTACAAAAGTCAACCGGAAGACAACCCACCGACTGACAACGGGTCAACAGAGTCGTGCGTCACAGAACCAGTGCCAGTGGAGGTGAAAAGCGAACCGCAAGAAAGCGACGCGGGCGAGAGTGCGATGAACGGCGCAGAGCACAACTACGCAACTTCCGATGGCGGCGCTTCGGACAGTGACACAAAAGTGGACGCGTCACGTCCAGCGATGATGACGACGAAAGAGGAAGACGGCGAATGCGTAAAGGACGAAAAGACGGAGGATGTGTCAGGCGGATGCGAGGAGCAGACGGGACCACGCCGGTGGTTCTGTCCGTTGTGTCCGTCGACGCTCCTCCACAGCGCCACGGAGTTGGACATCCACCGCCAGTGCCACGAGCACAACGACGACGGCAGCGTGTCGCTCAACTGCTACATGTGTGGCGCCGACTGGCAGACGCACCACTCACGCCGCTGGTACGTCATCAAGCGGCACCTACGGCTCGTGCACCGCGTCGACTTCCGGCTCGCGTGTGACCTGTGCGACGACGTCACGTTCGAGGACCACGAGTCGTTCAACCGACACGTGCAGCGCGCGCACAAGCGCCGTTGCCGGTTCCGCGCGTGCAAGTTCTCGGCGACGTCGCCGCGCGACGTCGAGACGCACGAGCGTTGCCACGACGACCGCGACCCGTCGAGGTTCCGCTGCTACGTGTGCGGCTACCGGCCGCGGCCCAACAAGCGGCCATGGTTCGTACTACACAGCCACCTGGTGGCCAGTCACCCTGGTGTCATCCGCGCCCTCTACCAGTGCCGCTCCTGCGACCGCGGGTACCAGGAGATGCAGAAGTTGGTGGCGCACGCGGCTTCCTGCGGCAAGACGAACAAGCTGACGTGCATCGTGTGTGCGCAGAAGATCCACCCCAAGGGAATGGTGTCGCACATGAGGTCCCACGTGGACAGGGAGGCGACGGGTGGCGGCACTCGTCTAGCGACTGCCAAGACAGAGGAGAAGGACTTGGATGAACACAAGGACAATTCAACGGAAGGTGAGCAAGACTCAAACGTCTACACGTGTAGCCATCATCGCATCTCGTTCTCCAGCCAAGACGAACTGACGCAGCATTTCGTCGAGGTGCACTGGGGACTGACAAAAGACGGCGCCACAGTAAGCAGCGGCGGTGACGTCAGCGCGAACCCGGTCAAGTGTCCGTTCTGCTATAAAAAGTTCGCGACGTGCGAGCGCTTCGAGCTGCACGTGCAATTCGTGCACGCGCCCGACAAGATGGGTAACGCGCTGTGTAACGCGTGCGGCAAGAAGTTCCTCAACGGCACGCGCCTGCGCAACCACGTGCGCGAGGTGCACGAGGGGAAGCGCCGCACGCGCATGCCACCGAAGCGATGCCCGAACGGCGCACCCATCAAGTATCACATGTGCGACAAGTGCGTCTACTCGACGCCGATACTGCTGCGCCTGCGCAACCACTACATGTCTGAGCACGAGGGCATCCACCCGTACGCGTGCGACCGGTGCGACTACAAGACGAACGAGAAGTCGGACCTGCGCCGGCACAAGCTCAAGCACAATGGCCTGAAGCGCTACCGGTGCGAGTACTGCCCGTACAAGACGGACACACGCTGGGTGCTCGTTAAACACTGTCACAGCCAGCACGGCGTCGAGCTGCCGAGGCGTAGTCGCGACACGCTCGGCTGTCGCATGTCCAAGCGACGACTCAACAAGAAGCCGGTACGACGGCCTCTCGAGACTGTCGTGACGTCACTTCCGCAGGACGCCAGTCTCGTGCTGCCGGGACACGCCGACGCCTTCCGCGTGCTCCCGGCCGACCCGTCGGAGCAGACGTATCACGTGCTCGAGCAGGGCAACGAGAGCCACATCCAGATTCTGAGCATGGACGAAGCGCTGCCCGGGTTCGACGTCCAGCAGGGTCACGACTTGGCTACTGGACAGCTGCAGCAATACCGAGTCATCCAGTCGACGTCACAGCCCGTGGTGACAGCGCCGGACGTCGAGCAGTTGCACGTCGTCACTTCCGGTGATGCAGGTGGCCTGATGGATGACGGTTCTCAGCAGTACGAGGTCGTGTCGACCGGCGGGTCTCAGTTGGCGGCGGGGCAGCGCTTCCAGATCATTACTGACGCCGACGGCGTGCAGCAAATCCAAGTGGTGATGGACGCCGAGGCGGAATTACTGGACAGCGACTACCAGGTAGTGAACCTACCGCCGGAGATGCAAGGCTACGACGAAGAGTACCAGCTGGTGCAAGGCATCGTGCCGTCCGTCGGGTCGCAAGAGGTGATCATCGACTGCGGAGATTCGGCGCAGGACGAGACGGAGGAGCAGCAGGTGTACGCAGTGGAACAGACGGAGGGCGAGGCGGGTGGCACGGAGGCGGGAAAGGCCACACTGCTCCTGCTTGCCGTGTCGCCAGATGATGCTCAATAA

Transcript

PE_Scaf2610_2.32

ATGCCAGTTTTCTTGGACACTGGTAAGTACTGTGGTGTCACAGTGTGTGATAGCAAATTACAATGAGCGAAGACCACCAACCATTCCGAGTACTTTATAACTCAAAACAATGTTTGAAGCAATGCAGTGATCACAATACTTATTTGTACGTGTTACCACGTCATTAGAATATTCATATGTGAATCAATGTCCACTATGCAATATTTGGCAAGCATTGGTGCTGTAGTAATTCACATAGTAATTATATATTAATACGCTAACTTTCAAATCTTATAAATCCATCTCGTCTGCGGTACAGTCGCCTCTTCCTATGTTCATTTGCTTGAACCAATGGCCTCTCGTCTGCCTCTCGTTGATGCGGTTAAGAAACACAAGTGCTGTGCAAGAACTAAACACTTCCACACGCGTCTGTTGCAGGAATCTGATAGGATGTCAGAGGGCGAGGTCTCTCGTGTACAAGAACAGTATGTTCTGCCACCAGCGAGTGGACGGCAGCAGGAAACCACAGTAGCTAACCAAATAGGTGGCGCTCCGCAACTTGCTCCGTCGTCTGAGGTGGAGAAAAATCCGGAAGAAAACAGCCCAATTACAGGGTATGTTGGTGATAACGTCACTGGTGCACTCATGTTGGAAACCGCTCCAACGTGTAACAAAGACTGGAGCCAGAAAGAAGAGTGTGGACATGATAAGTCGGCCACACATCACCAATCTGGTAGTGCTATTAAAGATGAAGCCGCCGTGTCCGAGGTGCACAGTGAACGACTGTTCAAAACACTTGCAAAAGGTGACGCACCGGCGACAACTGCCGCGTTTGTGTTGCACGTGACAAACCAGGAACCGTGTAAAGAAGACCGTATGAAGTCAGATAACAGTGTCATCGCTGTGCCTGACTCTCCAAGCCACTGTATGGTAACGAGAAAGATAGACTCCAGACGACCTTCAACGCACAAACCGGTACCGTCGAATAAGCGCAACACGTTGAATCCTAGAGTGACAGTCGACGTGCCTGTGTGCGACCGAACTATGGCGGCTCACATTGAGAGCGAAGTTGGCATTTCGGTGCTGTTCTTCTGCAAGAAGTGTCGCTGCTACAGTTCGACGTCGCTAACTGAAGTGTCGGACCATGCGACCACCTGTGATACGACAGCAGTGGTTCCGGTTAAACGGAAGCGTGGTCGTCCTCGGCTGACTTGTACGGCGGGCCACAAGGCGGTTGTGCAAGATGTAAAGTCATCCAACGCGATCGTTGATTCGGGCGGCGGTGACGGTCGGAAGCGTGCGGGAACACCCGGCGAAACAACCAATGAAGATGGTTTGCCGCGTAAACGAGGACGCCCACGCCTCCAAAGGACTCGCAGCGGTGACGAAGACAGTTACAAAAGTCAACCGGAAGACAACCCACCGACTGACAACGGGTCAACAGAGTCGTGCGTCACAGAACCAGTGCCAGTGGAGGTGAAAAGCGAACCGCAAGAAAGCGACGCGGGCGAGAGTGCGATGAACGGCGCAGAGCACAACTACGCAACTTCCGATGGCGGCGCTTCGGACAGTGACACAAAAGTGGACGCGTCACGTCCAGCGATGATGACGACGAAAGAGGAAGACGGCGAATGCGTAAAGGACGAAAAGACGGAGGATGTGTCAGGCGGATGCGAGGAGCAGACGGGACCACGCCGGTGGTTCTGTCCGTTGTGTCCGTCGACGCTCCTCCACAGCGCCACGGAGTTGGACATCCACCGCCAGTGCCACGAGCACAACGACGACGGCAGCGTGTCGCTCAACTGCTACATGTGTGGCGCCGACTGGCAGACGCACCACTCACGCCGCTGGTACGTCATCAAGCGGCACCTACGGCTCGTGCACCGCGTCGACTTCCGGCTCGCGTGTGACCTGTGCGACGACGTCACGTTCGAGGACCACGAGTCGTTCAACCGACACGTGCAGCGCGCGCACAAGCGCCGTTGCCGGTTCCGCGCGTGCAAGTTCTCGGCGACGTCGCCGCGCGACGTCGAGACGCACGAGCGTTGCCACGACGACCGCGACCCGTCGAGGTTCCGCTGCTACGTGTGCGGCTACCGGCCGCGGCCCAACAAGCGGCCATGGTTCGTACTACACAGCCACCTGGTGGCCAGTCACCCTGGTGTCATCCGCGCCCTCTACCAGTGCCGCTCCTGCGACCGCGGGTACCAGGAGATGCAGAAGTTGGTGGCGCACGCGGCTTCCTGCGGCAAGACGAACAAGCTGACGTGCATCGTGTGTGCGCAGAAGATCCACCCCAAGGGAATGGTGTCGCACATGAGGTCCCACGTGGACAGGGAGGCGACGGGTGGCGGCACTCGTCTAGCGACTGCCAAGACAGAGGAGAAGGACTTGGATGAACACAAGGACAATTCAACGGAAGGTGAGCAAGACTCAAACGTCTACACGTGTAGCCATCATCGCATCTCGTTCTCCAGCCAAGACGAACTGACGCAGCATTTCGTCGAGGTGCACTGGGGACTGACAAAAGACGGCGCCACAGTAAGCAGCGGCGGTGACGTCAGCGCGAACCCGGTCAAGTGTCCGTTCTGCTATAAAAAGTTCGCGACGTGCGAGCGCTTCGAGCTGCACGTGCAATTCGTGCACGCGCCCGACAAGATGGGTAACGCGCTGTGTAACGCGTGCGGCAAGAAGTTCCTCAACGGCACGCGCCTGCGCAACCACGTGCGCGAGGTGCACGAGGGGAAGCGCCGCACGCGCATGCCACCGAAGCGATGCCCGAACGGCGCACCCATCAAGTATCACATGTGCGACAAGTGCGTCTACTCGACGCCGATACTGCTGCGCCTGCGCAACCACTACATGTCTGAGCACGAGGGCATCCACCCGTACGCGTGCGACCGGTGCGACTACAAGACGAACGAGAAGTCGGACCTGCGCCGGCACAAGCTCAAGCACAATGGCCTGAAGCGCTACCGGTGCGAGTACTGCCCGTACAAGACGGACACACGCTGGGTGCTCGTTAAACACTGTCACAGCCAGCACGGCGTCGAGCTGCCGAGGCGTAGTCGCGACACGCTCGGCTGTCGCATGTCCAAGCGACGACTCAACAAGAAGCCGGTACGACGGCCTCTCGAGACTGTCGTGACGTCACTTCCGCAGGACGCCAGTCTCGTGCTGCCGGGACACGCCGACGCCTTCCGCGTGCTCCCGGCCGACCCGTCGGAGCAGACGTATCACGTGCTCGAGCAGGGCAACGAGAGCCACATCCAGATTCTGAGCATGGACGAAGCGCTGCCCGGGTTCGACGTCCAGCAGGGTCACGACTTGGCTACTGGACAGCTGCAGCAATACCGAGTCATCCAGTCGACGTCACAGCCCGTGGTGACAGCGCCGGACGTCGAGCAGTTGCACGTCGTCACTTCCGGTGATGCAGGTGGCCTGATGGATGACGGTTCTCAGCAGTACGAGGTCGTGTCGACCGGCGGGTCTCAGTTGGCGGCGGGGCAGCGCTTCCAGATCATTACTGACGCCGACGGCGTGCAGCAAATCCAAGTGGTGATGGACGCCGAGGCGGAATTACTGGACAGCGACTACCAGGTAGTGAACCTACCGCCGGAGATGCAAGGCTACGACGAAGAGTACCAGCTGGTGCAAGGCATCGTGCCGTCCGTCGGGTCGCAAGAGGTGATCATCGACTGCGGAGATTCGGCGCAGGACGAGACGGAGGAGCAGCAGGTGTACGCAGTGGAACAGACGGAGGGCGAGGCGGGTGGCACGGAGGCGGGAAAGGCCACACTGCTCCTGCTTGCCGTGTCGCCAGATGATGCTCAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR017956	Conserved_site	AT hook, DNA-binding motif	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24409	ZINC FINGER PROTEIN 142	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf2610_2.32 global RNA-seq network