Detailed information of PE_Scaf1280_1.10 in Paraescarpia echinospica Gene info
Gene IDAnnotationChromosomeStartEndStrand
PE_Scaf1280_1.10E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATEDSuperscaffold95504921355054696+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR045103FamilyE3 ubiquitin-protein ligase RNF5/RNF185-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12313E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0044390Molecular Functionubiquitin-like protein conjugating enzyme bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071712Biological Processobsolete ER-associated misfolded protein catabolic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for PE_Scaf1280_1.10 global RNA-seq network
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