Gene detail

Detailed information of PE_Scaf1181_0.2 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf1181_0.2	SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN	Superscaffold13	39731261	39734962	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf1181_0.2

TTCGTTGCAGATGAAGGTGATGCAAGACCACATTCGACGAGTGCTCGACTCGAAGAAGATCCCATACACGGAGATCGACGTGGCGGCGCCGCACCAGGCTGAAGAGAAGGTCTTCATGCAGAAGACACTGCAGCTTGACGACGGCGACCTCGTGGCCCTGCCTCCACAAGTCTTCAATGACAAGAACTACCGCGGGGTGCGTAGTAACGGGTCGGATAACACACACAGTTTAAATACTGAAAACAGTTGCGATATCGCGCATTTACGATATGCTAAATGAATTGCTCTTTCGCTCTCCACCCCTCCCTTCCTTCTTCCGTCCCTCCCAACCTCCCCCTCCCTTCCACCCTCCCTCCCTACCTCCGCATTTCCCGTTCTACGTGCTTTCCTCCCTCCGTCCCCTTCCCTCACTCCATCCATCTGACTATTTTTCTGAAAAGATCAGAAATATTTGTCGTGAGTTGTCTACCAGCTCTGATAGAGGAAATGGTGACAAAAATGTGGATACCGACAACTGCTGCACATCGCAGCTGCCTTCCTTCTCCCTACCAATAGCAGGCGAAATCAAGAATATCACCATGGATGCACCGCCTAAATCATGTGACTTAGACCAAGCTTCTACATGGCTAGTGAGAGAATCGATCGATGAACTTCTGCCCATTTTGTCGCACATAGTTATGGCATCTCTGCAGTCGTCCGTTGTTCCAGATGAATACAAGACTGGCTGCATTTCGCCATTAATCAAGAAAGCTGGACTAAATCCAGAATCATTGCAAAATTAACGACCTGTATCGAATCTGACATTTCTCTCTAAAGTAATCAAGTGCGTTGTAGCAAAACAGCTGAATGTCCACATGTAAGAGAACACTTTGCTCGACCAGTATCAATCGGCATATCGACAAGATCACTCAACTGAAACGGCTCTGCTTAAGGTACACAATGTTATTCTGTCTTCAGTAGACCGTGACTGTGTTGTTGTGTTTGTTATGTTTGACTTGACCGCCGCTTTCGACACCATTGACCACGGCATTCTATTGAGCAGACTCACTCCCAGATTCGGTGTCACTGGCGCTGCGCTTGAGTGGTTCAGATCTTACTTGTCCGGTCGGCATCAAGTCGTTCGTATTGGAAGTGTCATATCCTCCCCAGCTGCTGTGCCGTTTGGTGTACCGCAAGGTTCCGTACTCGGGCCATTGCTGTTCACTGCATATATTACACCACTTGGCGACGTCATCAAGATATTCAACTTGGATTATCACCTATATGTCGACGACACGCAACTTTATGTTTCGTTTTGTCCTGGTGGAGATGGCCAACTGAACTCAATGGATCGTTTGTGCTGTTGCCTTGAGGAAATTGGCGAATGGTATCGGACCAATTTACTGAAATTAAATGATCAGAAGACGGATGTCATGGTGTTTGGTACTAAACAGAAGTTGCCACTGCTAAAGGAGATTCGTATTTTTGACTCGACTTTGACTTCGTCTTCAAGTGAGCGCAACCTGGGGGTGTATTTCATAAATCCCTCAACATGACTAACCACATAAGTGCCATTTGCGGAACAGCGTATATGCACCTCCACAACATCAGTCGTATCAGGCGATACCTCACAACAGATGCGACTAAATCACTTGTGCACGCTTTCGTCATATCTATATTGGACTACGGGAACGTGCTATTGGCTGGGCTACCACGTGACCACATTCACAAACTCCAGCGAATCCAAAACATGGCAGCCAGAATCATCACGTTCACACCTCGCCGTGACCACATAACTCCGTTTCGAAAAAGAATTATACTGGCTGCCAATCAAATGCCGAATCGAGTTTTAAATACTCCTTAATGTGTTCAGATGTCTGAACGGGACGGCGCCGCTGTATCTTGCCAACCTGTTAACGAGGCACCGTCCGGGACGCACACGTTCATCTGAACAACTTTTGCTTGAAGTTCCACGAACGAACCTGGTCAGTTTCGGGGACAGGTCCTTTCGTGTGATTGGACATCGACTATGGAATGCACTGCCCATTGCTTTCAAGTGCAGCAGAACTCTGTCGGCGTTCAAAAAGACACCAAAGACGCACCTGTTCAAAGCTCAATACTGCTGACATTTTTAATATTTCATTTCAGTTGAGGACACTTTACTGCATATCTTATTTTGATACATATTATTTTGAGTGCATGTATCAGTATATTTATGTATGCTTACGAGCGTGTGCGTGTGTGGGTATGTATGTATAGGTATGCATACATGTAAATATATTAAAAATACGTCTAATTTATCTAATTTTATTTATTTATAGTCTGTAATTAATAGTTTTAATATAACTAACTTAATTTGTTCTACAGATTATCTAAAGTTTCTTTTCTTGTAGGTTTTGTTAGTATACTTTGTATCGCCTGATTGAATTTTATTGTACAGCGCATTGAGCATATTATGAATATTGCGCTCTATAAATATTAAATATTATTATTATTATCCTCAACTATCCCTCCATCCTCCTTCCGAAACATCCGCCCTCCGTACTTCCCTCCTTCCTTCCCCTATCCCTCCTTTCACCCACCCTTCTCACTCCTCCCTCCCTCCCTCCCTCCTCTCTCCCTCTTCCTTCCCTCCTCCCTCCTCCTCTGTCCCTCCTCCCTCCCTCCTTCCCCCCTCCTCCCCCCGTCCCTCCTCCCTCTTTCCTCCCTCCCTACCCCTTCATTCCTCCTCCCTCCCCCTATTCAGGTTACAATTGTCGGTCACTTTCTAAACTCAACTTAGACCCCTTCACCGTGTTATGTACTCAAGTATGTATCTTTATGCAGAAAGTCTTGAGAAAATTTAAACATCTGTTTCATGTTCACAACAATTAGAAAAAACTCAAGCATGGTATTTTCTCAAACATTATTTTTCGGGTGGACTCTAATTTTGTCACGAGATTCGCAAGCGTACTGTTAGAGGCCTTGAACTTTTCGTGACCCGAGTGATGTCTCTCTTTGCAGGATTACGACGCGTTCTTCAAAGCGATCGAATGTGAACATCTCTTTGAGTATCTCGACATCGAAGTTCCAACGCATGAAGTCGAGTACACACTTAGACACAGATAATGTGAACCGCTTATTGTGTCCCACTTGTACTGCGCCAATCAGCCAAAGGTCGCCGTTTCTGGATGTCAATTATCGAGAGTGCATGTAACACCGGGAGCTTTGTTCTTTATTGAAACACCCTATCCCTGTGAATTGTTGTTCTCGTTCAACAAAAGCATAGTTCTTTTGACAGTGTGTTCGACCAAAAAAGTGCGTGTACTGTTTGGCATTATCACGCACACTCATTTCACACTGACAATACAAGCAGTATCCGTTAACTGGGCCAGTTTATTATGCACCTTTGTATGACGGGACTCGCCATGACACGTTGTAACTGGCACTGTCAGGTACTGACTGCCATGAACGTGTTGTGTTACTGTTACGTTACTCCACTGGTGGGCCTGCTGCTGGTGCGAATATGGCGTTAAACATGGTTTGTTCCACACCTGACTATGTACACGCTGCTTGAAATACAATCGTAAGCTACCACAGATTGAATATTTAAATTATTATAGGTATATTGTATGTCGTATGTATTCTTGTCCATCGTCAACGTACAATATTATGAACTTATCCGTATTTGTCACACTATGATTTGTTATATACCGAGTTCAATAAAACATTTGTGAATAACAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04908	SH3BGR	SH3-binding, glutamic acid-rich protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006993	Family	SH3-binding, glutamic acid-rich protein	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR051033	Family	SH3 domain-binding glutamic acid-rich protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12232	SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf1181_0.2 global RNA-seq network