Gene detail

Detailed information of PE_Scaf11781_4.1 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf11781_4.1	POU DOMAIN	Superscaffold12	13954152	13958315	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf11781_4.1

ATGGCCGAAAACGACGCACATCGCTCGCTCTGGGCTCACATGCGGCTGCCAATTCACCCGTATTCATTGTCGCCATGGAAACTCCCGCCACCCAGCTACGTAGCAGACGACACTGCGTCTTGGACACGTTGGGTGACTCCAAGGGACGTTCGCGCCCCGGTCAACTTTCCACCGTCGACAATTCTTCACTTCCCGTGTGGTATTAACCTCCTGTCTCGGTATTACCCCAACTGGTCGGGACCTGACCTTGTCGCGTACCCGCCGGCGATGCGGGAGACCTCGTCGCGGTCACCCACGGAGGCGCCAGCGACCACGGTAGCAACAGCTGAAGAGGAGATCGAGACGGCCGATTTGAAGTCACTCGAAGACTTCGCGGCAAGTTTCAAGGCGCGTCGTATCAAACTCGGCTACACGCAGACTAATGTTGGTAAGTGGATCGTTGAGCAGTAGGGCAAACGACCATCAGAAATTACATTTTCAAAAGGAAGCGGTATGTTTCTAATGTTTTATTTTTGTAATTAATATAATGTTCTTAAGACTATATTAACTATGTTGAAGGTACCTTGCTCGCCAAATGTTGGCTAGTAAGCCCGTAGCAATGTTCGCAATTTAAGATCGTTATTCTAAAAGGGTTCAATAAACGTGTCAGATAATTACAGACTAGTGAGTTTAACACCAATAGGATATTATTAGAAAAGTCAATTAGAAGAAATGATCAATGCCATTAAATTGTGGGAAATGTAAACACTTATATACAATTAAGTTTAAAGTAGCCATTGTATGTAATAATACCGCATGTAGACATACAACTATTTTAATGATAACATAGTTAACCTCACCAAAGCATATTATATCGCAATGAGACAACACCACCGTGAGTAAGCGGAGCGATAGCCCAACAATGTATATTCGGTGGGCATCCCATGGTCCAAAACACGCCGACAGTCAACATTTGACAACTTATCAATTAAGAATAGTTAACTGCACTTTTTGCTATCAATATGCCAACACACCTGCAATCGGCTATGGAAGAACAGAGAAATCGCTATGGCTGTGCAGAAAGGGTGGTTGTCCAAGACAGGTTCTACTACATGTCCACTTGCTGTAACCTAATATAAGTCCTGTCCAATCCCGCAGGTAACTCGCTGGCAGGCGTGCACGGCTCCGTCTTCAGTCAGACGACCATATGTCGCTTCGAAAACTTGCAGCTGAGTTACCGCAACGCGTGCAAACTGAGGCCGATCCTCGACCAGTGGCTACAGGCGGCAGAGCGCAGTCAGGCGGACGACACACAGGGTGAGATCTACGTCGTGGTCTCAGAGCAACCACAGTAGCTTCAGATACACATGAATGAACACACATACTGGACTCCCGATAGGTTTTGGCGTGGTGTGTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTGCGTGTGTACGTGTGTGTCTGTGCGTGCGCGTGCGTGCGCGTGCGTGTATTTTTATGATTTTGTGTGCGTGCGTGTGTACTTGTGGCCGCGTGTGCGTGACTGCGTGTGTATATGAGTGTATGTGTATGCGCGCGCGCGTGTGTATGTGTGTGTGTCCGCGCGTGTGCGTGAGCAAGTCAATATATACGTGCGTCCATAATATATATATATATATATAGCAATATATATATATATATGTATGTACATATATATTATATATATATATATTATGGACACATATATATATATAGCACGGAATGTCATAGCGATGTCACTGCGGTTTCAGGGACGGCAGACAAGCGACGGAAACGTCGTACAACAATCGGATCTTCGGCGAAGGAGGCGCTTGAGCGCTATTTCGTCCGTCAGCCGAAGCCGTCGTCCTACGACATCTCCCGGATGTCGGCCGCACTGACGCTCGAGAAAGAGGTCGTACGGGTGTGGTTCTGCAATCGCCGCCAGAGGGACAAACGAGTCAAGATCTCGCTCTCCGGCAGCGAAATGAGAACTATATTGTGATTCTACATTGCACACAGACGCGTAGTAGTTAATAAAAACATTATATTCCATAGGTGCTTTTGATAAGGGTATTGTGTTCGCATTATTCCCACTGTCCAAGCTGCATCCGGTCACGTGCTGGCCTCGCATGATGTAGGGGTGCGGGAACATTGCAGCAGAATATAAAAGAGCCAACGACTTTGCCAGGTAAGATATTCGGCAACAACTTCTTAGAAGTGTTGATGTGAACGTTCCAGTACTGTGCGATGTCGTTTCATGTACAATTTATCGCGCTAACGTTTGACTAGTACGAAGAAGAAAAGGGAGAAGAAGAGAGGGAAGTGAATACGGAGAAGAAGATGAAGAAGTAGCAAGATATGGATACTGAAAGGATTGCATGAGTACCAAAACGGTTGGTGAATCTTTCCAAGGACAGAGTGAGGTTATCCATGTTGAACGTTTACAAAATGTGGTTTGACAACACTAGAGACCGGGACATTAACGATGACGTTTCCAACATGGAAATGGTGCTGCCACTAGCAATAAGTTCCTCAACCACAGAGAACGAAGAAGAGCTAGAACTAATTGTGTAATTAGTGTGTCATGATGGGTGATTTTCCACAATAATTATGAATACAATTTAAAATAGTGTATGTATTGTAATCTTATTGTGGAAATAAAAGTTGTAATATTGTAGTCATTGGCGTCGGAACCGGATTGCTTGTGGGCTCAGCCCCGATGTTGCGAGAGTGGGCTTAATCTCCGCAATTATCACTATTCCAGTTGGTACTTCGGAGTTAAATTTGAAGAAAACAAATTGTCATAATAACAATAAAAGATTGTAGTCTTTTTTAGAGAATTCAAAAACAACACCGGTGCATGGTTTTTTTTTCGTGGTAAAATTGAGAACGTAATCCCGGAAGATTTACAATAGCACCCCCTTCCCCCTCCCGCCTTCCAATGTGTTGTCTGACAGTGTCCGAAGTGTTGAGTGAGGAGCAAGACAAAATATTGTTGTGAATGTCATCGTGAAAAATTTCCCGCAGCACAGCAAATTGGCGATCTTCGAGCAGGTCCTTCGCAGCAAACGTGTGACGTCAAACGACGGCATTGTCTAGGCAACGCGCCGGCCATTAGTTCTGAGCGAAGGCCGTATTCCAGCAGCTTTCTGGCTGTTTGGAGACTGCATATGTCGCGATAGATACACCTTTATTTGCCACACGCCAATGTATGTATGTCTGTTTTGCTAATCCTCCTACGCGTTGTGCGCCACTGAAACCAAACTGTCGAGTGTTCACTTACGACCACAGTAAGGATCCGTAACATTTTGTTTTTTAAATTCACGCGACATTTGGCGTCATTTGTTAGTGAATCTGTCTGGTATTGACATGTTTCATGCTGCCGAAAATGCGTGATTAATGCCCTGAGAATCGGTGCCGTTTTCGATTTACTTTATATCGACAGACACATACAGCTGTAGTCACCATGTACAGACATACTATAGTGCCTACAAAATTGTCTGCCTCCTAAATGTCGAGTATGAAAGGTATTAGCGTAATATGGTGTCAAAGTTAAGAACCGCTGCTATAATTATAGCAACGTTATTTCAAAAGTTGACCAAAATGCTATCTTTCCAAGCAGATGCAGACACACGCAATGGCCGAGTCACCTGACACCGAATCCTCGTCGCCACCTAGCGCCTGCGGGAACAACGTCAACATGTCATGCAGTGTGCATGCGTCCCCTACGTCTAACGAGGTGTTGGTCAACTACATGCGTCACATACAGTGCCAGCTGGCGAATATGCGAAGCGAATTCCGACGCGCCCGAAGTGACGGGCTGCGGTCGAACGCTTCGACGTCGGGCTTGCAGTTGTCGAAGGCAACCGGCGAGAAACCGCCGAAACAGCGCCGGAAACCGAAGATGAAAGCGAAGAAAGCGTCGCGGCCGGGGTTCGAGCCAACGCAAGCGGAAGACACACTGGTCTTGCCTCCGCTCATTCCCAGACCGTCCAACGAGCCTAAACGGCGACGAAGGAGGAGACGCACATCACGCAAGTCATTAGGCACTTTGCCGCCACTCGAACCGCAGACGGGGGACACGCAATGGCGTCAACAGTGCGAGTGA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Pou

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000327	Domain	POU-specific domain	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR013847	Domain	POU domain	Interproscan
IPR050255	Family	POU domain transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636	POU DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf11781_4.1 global RNA-seq network