Gene detail

Detailed information of PE_Scaf11169_0.10 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf11169_0.10	ZINC FINGER AND SCAN DOMAIN-CONTAINING	unanchor3449	15392	18168	+

Gene Structure

More details in Jbrowse Sequence

CDS

PE_Scaf11169_0.10

ATGGAGACAGAAGAGATCGTGACGCCGGCCTCCGATGGAGCAGATTGCCCGCTCACTCCGCCACCAAGAGTTGTTGTTGCTTACAACCCGACCCCCGCTGTGTCTCCCGGCGGGGCTTTAAGTCCAGCTGATACCTCGGATGATCGCGAACACGCCACCTGCTCCACTCCTGAAGATACACGCAGTGAATGTGACACAAATGCCGCACTCGACAGAGCACGCAGTGTGACCGAGCAGTGTGGTTCGGCAGCCGTCAGTGTAGTGAAGGAGGAGGTCGGGGTAGATCGGTGTGGCCTAAGTGACGGAGGGACGAGGCACTCGGTTGTAGCAGACACCGTCGTCACAGAGGCGATGAACACCGAAAACACGACTCCGACGGCTGATACGTGTTTAACAGATGACAGCAGTTCAGAGGACGACACTCATTCATTGTGTAAAAAGCGTACCAGGAAACGCGGTCGTCCCGGAAAAGCAAACGGGCACTGCGCCGATGTGTCGAAAGAAAAATCTGGTTTGCTTATTGTCGCTCTCGTGAAGCCGACAGTCAATGGCACCCAGCGGTACTCATGTGAAATGTGTGAGAAGTCATTCCGTAGGTTTATTCAGCTAAAAGTTCATGAAAGATCTCATGCGGAAGAGAAGCCGGCCGCGCGTGTTGTACGCAGGAAGTCGGTTGATACACCGGCTTCCTGGAAGAGTGTGCAGACTGTAGCGAAACGTCACGTGTGTGGCGAGTGCGGCAAAGGCTTCGACACGTCGAGCCATCTTAAGCGGCACGACAGGATTCACTCGGGTTTGAAACCATACGCGTGTGAGATTTGTGGCAAGTCGTACGCGGATTCGACGTCCCTCAGAATCCACAACGCGTGTCACTCGGCCGACAAACCACACACGTGTGACGTGTGCCACAGGGCGTTCCGTCACCTGAGCAACTTGAAAGTGCACACCAGAATACACAGCGGTGTTAAGCCCTACGCGTGTGACACGTGCGGTAGAACGTTCACCACTTCGAATCACCTGAAGCGTCATGTTGTGTTGCACATGGACGTGAAGACGTTCCCGTGCAACAACTGTGACAAATTCTTTGCCGACGCCGCCTCTCTCGCTGTTCACAAGAACAACTTCCGCGATGTCACGCCACACACTTGTACCGAGTGTGGGAAATCATATCACACGAAGAAGCAGTGCAACATTCATCAACGAATTCACGGAGACACGAAACCGTATAAATGTAACATGTGCGGAAAGTCGTTTACTACATCGTATCTCGTGAACCGACACCAGACCAACCACCCGGGTGTCCAGTCTCACGTGTGTGACACGTGTGGCAAGTCGTTCTCCAACTCGGATTCCCTTGCGATTCACAAACGGAAACACGTCACGTTCACTTGCTCGAGATGCGGGGAGTCGTTTCATACGCTGAAGCAGTGTACTCGGCACGAGAAGGAACACATACGCGAGCAGTCGCGTACGTGTGACGAGTGCGGGGAGACATTTCCCACAGCCAGAGAATGCAAGAAGCACGAAACAGTGCATACGCTTGACCAACCATGCATATGTGAGATATGCGGGGAGACTTGTATTGGGTCTAAGAGTTTCGCCGTCCACCAGAGAACCCACGCGATGAAAAAGGAACACGCGTGTAGGTTTTGCGACAAGTCGTTCCGCAATCAGAGCAGTCTGACGATGCACGAGAGATGTCACACGGGGCTGAAGCCACACGTGTGCATCACTTGCGGCAAATCGTTTCTCACTCCGACCCATCTGACCCGGCACGCGGTGATACACACGGGACTGAAGCCGTACATGTGTGACGCGTGCGGAAAGTCCTTCTCCGATCCCAGTGCGATGCGATCGCATAAGAAGACACACTCGGACGCCAGGCCGTACATGTGCCCGGTGTGTGCCAAGTCGTTTCGCACGCTGAGTAACTGCAAGGTCCACGAAAGGTGTCACAGTGGAGTGAAACCGTTTGTGTGCGGGGTTTGCGAGAAATCGTTCGTCTCTGCCGGTCAGCTGAGACGCCACACGAAGGTGCTGCACTCGACCGTGAGGCCGCACCAGTGTAGTACGTGCGGGAAAGCGTTCGCGCTGGCGTCTGGTCTCTCCAACCACGAGCGATCGCACGCGAACGTAAAACCGTACGTTTGCACCATATGCGGGAAAGCGTATGTTCACGCGAGCCACTGTAAGATCCACGAGAGGTCACACGACGGACAGAGACCATACATGTGCTCTACATGCGGAAAGTGTTTCGCCACTTCGAGCCACCTTAAGCGCCACGACAGAATTCACACGGGTTTGAAACCATACTCGTGTGGGATATGTGGCAAGTCGTACTCGGATTCGACGTCGCTCACAATCCACAAAGCGTGTCATTCCGCCGACAAACCGCACACGTGTGACGTGTGTCACAAGTCGTTTCGTCACCTGAGCAACTTCAAAGTGCACAAAAGAACCCACAACGGAGTTAAGCCTTATTCGTGTGACACGTGCGGGAGATCGTTCACGACTTCAAGTCACCTGATTCGTCATGCTATGTTACACGACGATGTCAAGCCGCACCCCTGCGACATCTGTGAAAAGTCGTTCTACGACTTGACGTCTCTTACTGATCACAAAAATAAACACCACTTATATATAAAGCCGCACTCTTGCACCGTTTGTGGGAAGTCATTTTACACAGCAAAACAGTGTAAACGTCATTTAGCACGACACGCATCTATACAACCTCAAGGCATGTCTGCATAG

Transcript

PE_Scaf11169_0.10

TGAGTGGGGACCACGTGCCTGTTGCCATGGAGACAGAAGAGATCGTGACGCCGGCCTCCGATGGAGCAGATTGCCCGCTCACTCCGCCACCAAGAGTTGTTGTTGCTTACAACCCGACCCCCGCTGTGTCTCCCGGCGGGGCTTTAAGTCCAGCTGATACCTCGGATGATCGCGAACACGCCACCTGCTCCACTCCTGAAGATACACGCAGTGAATGTGACACAAATGCCGCACTCGACAGAGCACGCAGTGTGACCGAGCAGTGTGGTTCGGCAGCCGTCAGTGTAGTGAAGGAGGAGGTCGGGGTAGATCGGTGTGGCCTAAGTGACGGAGGGACGAGGCACTCGGTTGTAGCAGACACCGTCGTCACAGAGGCGATGAACACCGAAAACACGACTCCGACGGCTGATACGTGTTTAACAGATGACAGCAGTTCAGAGGACGACACTCATTCATTGTGTAAAAAGCGTACCAGGAAACGCGGTCGTCCCGGAAAAGCAAACGGGCACTGCGCCGATGTGTCGAAAGAAAAATCTGGTTTGCTTATTGTCGCTCTCGTGAAGCCGACAGTCAATGGCACCCAGCGGTACTCATGTGAAATGTGTGAGAAGTCATTCCGTAGGTTTATTCAGCTAAAAGTTCATGAAAGATCTCATGCGGAAGAGAAGCCGGCCGCGCGTGTTGTACGCAGGAAGTCGGTTGATACACCGGCTTCCTGGAAGAGTGTGCAGACTGTAGCGAAACGTCACGTGTGTGGCGAGTGCGGCAAAGGCTTCGACACGTCGAGCCATCTTAAGCGGCACGACAGGATTCACTCGGGTTTGAAACCATACGCGTGTGAGATTTGTGGCAAGTCGTACGCGGATTCGACGTCCCTCAGAATCCACAACGCGTGTCACTCGGCCGACAAACCACACACGTGTGACGTGTGCCACAGGGCGTTCCGTCACCTGAGCAACTTGAAAGTGCACACCAGAATACACAGCGGTGTTAAGCCCTACGCGTGTGACACGTGCGGTAGAACGTTCACCACTTCGAATCACCTGAAGCGTCATGTTGTGTTGCACATGGACGTGAAGACGTTCCCGTGCAACAACTGTGACAAATTCTTTGCCGACGCCGCCTCTCTCGCTGTTCACAAGAACAACTTCCGCGATGTCACGCCACACACTTGTACCGAGTGTGGGAAATCATATCACACGAAGAAGCAGTGCAACATTCATCAACGAATTCACGGAGACACGAAACCGTATAAATGTAACATGTGCGGAAAGTCGTTTACTACATCGTATCTCGTGAACCGACACCAGACCAACCACCCGGGTGTCCAGTCTCACGTGTGTGACACGTGTGGCAAGTCGTTCTCCAACTCGGATTCCCTTGCGATTCACAAACGGAAACACGTCACGTTCACTTGCTCGAGATGCGGGGAGTCGTTTCATACGCTGAAGCAGTGTACTCGGCACGAGAAGGAACACATACGCGAGCAGTCGCGTACGTGTGACGAGTGCGGGGAGACATTTCCCACAGCCAGAGAATGCAAGAAGCACGAAACAGTGCATACGCTTGACCAACCATGCATATGTGAGATATGCGGGGAGACTTGTATTGGGTCTAAGAGTTTCGCCGTCCACCAGAGAACCCACGCGATGAAAAAGGAACACGCGTGTAGGTTTTGCGACAAGTCGTTCCGCAATCAGAGCAGTCTGACGATGCACGAGAGATGTCACACGGGGCTGAAGCCACACGTGTGCATCACTTGCGGCAAATCGTTTCTCACTCCGACCCATCTGACCCGGCACGCGGTGATACACACGGGACTGAAGCCGTACATGTGTGACGCGTGCGGAAAGTCCTTCTCCGATCCCAGTGCGATGCGATCGCATAAGAAGACACACTCGGACGCCAGGCCGTACATGTGCCCGGTGTGTGCCAAGTCGTTTCGCACGCTGAGTAACTGCAAGGTCCACGAAAGGTGTCACAGTGGAGTGAAACCGTTTGTGTGCGGGGTTTGCGAGAAATCGTTCGTCTCTGCCGGTCAGCTGAGACGCCACACGAAGGTGCTGCACTCGACCGTGAGGCCGCACCAGTGTAGTACGTGCGGGAAAGCGTTCGCGCTGGCGTCTGGTCTCTCCAACCACGAGCGATCGCACGCGAACGTAAAACCGTACGTTTGCACCATATGCGGGAAAGCGTATGTTCACGCGAGCCACTGTAAGATCCACGAGAGGTCACACGACGGACAGAGACCATACATGTGCTCTACATGCGGAAAGTGTTTCGCCACTTCGAGCCACCTTAAGCGCCACGACAGAATTCACACGGGTTTGAAACCATACTCGTGTGGGATATGTGGCAAGTCGTACTCGGATTCGACGTCGCTCACAATCCACAAAGCGTGTCATTCCGCCGACAAACCGCACACGTGTGACGTGTGTCACAAGTCGTTTCGTCACCTGAGCAACTTCAAAGTGCACAAAAGAACCCACAACGGAGTTAAGCCTTATTCGTGTGACACGTGCGGGAGATCGTTCACGACTTCAAGTCACCTGATTCGTCATGCTATGTTACACGACGATGTCAAGCCGCACCCCTGCGACATCTGTGAAAAGTCGTTCTACGACTTGACGTCTCTTACTGATCACAAAAATAAACACCACTTATATATAAAGCCGCACTCTTGCACCGTTTGTGGGAAGTCATTTTACACAGCAAAACAGTGTAAACGTCATTTAGCACGACACGCATCTATACAACCTCAAGGCATGTCTGCATAG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13912	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23226	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf11169_0.10 global RNA-seq network