Gene detail

Detailed information of PE_Scaf11041_2.8 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf11041_2.8	CYSTEINE PROTEASE FAMILY C1-RELATED	Superscaffold2	43469896	43475574	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf11041_2.8

TGAATAAACGTAGTATTTACATAAACGAAGTGACGCCGATTTTGCAGACAGCGACACAGTATAAAACAATGCTGGGTTTGAAAGTACCTTCAAAAGACAAAATCTGCGAACCTCCTTTGTGTGGGAAGGACCTAAGCCCACTGATGTCTAGCAGAAGACGAGTCGCCCGGTCAATACCCGACAGCATCGACTGGAGGGACCATGGTTACGTCACACGCGTTAAAGATCAGGTAGGCGGTCCATTCAACAGCCCCGCGGACTCCTCGGGTATTGATATGATACTTGTTGCTTTGTTTGTGTTGATTATAACATTTTTATTTTACACAAATATGACAATGTGTATGTTTCCTGTACTGGTATACGTATATTGCAATGCAATTCTAACAATTTATTGTTTTTTTTAAACATAATATGATAGTTATTATGTAAATGTTTGATCAATGTAGGTTCCCAAATGATCTGCCAGTGGTGTTATACCATATATTTCCTTAAATGGTAATTTGCGGACAAACGGCTATTCGTTGAATTAAGTGAAACTGTCAGTGTATTTTCGTCAATGGTGTCACCATTCGTAAAAATAACACCACCATAAAACAAAGCAAACTTGTTTACTAGTTATAGACATTTAATCTGCGTCCACAGTGTGCACTGTGATTAATATTGATAAAGCCAAGCAATCCCATTCTTGTGACTAGCTCAACGATAACATGTTTAAGTATGAAAATATACAATTACAGGAGACTGCCTGTGCTGCCACGTGCTACCGTGCTATCAGGACCACCTACACGGTAACTTTCTAACGTGCAACCATCGCTAACACCAATGTCGACACTAGTTCTTCAAAACAGCACAGAGCGGGAGTGATGATAAAATGTTGTTCTAGTGACTTGAGGTCATCGCGCTGTTACAGGGCTACTGCGGCTCTTGCTGGACTTTCGGCTCAACTGGTTCAATGGAAGGACAGAACTTCAAAAAAACGGGCCAACTGGTCGAATTGTCGGAGCAGAACTTGCTTGATTGTTGCGGTCCGATATACGGTAGGGTGTAATTCGGCTTGCGGCCAGGTAGACACACTCATATCTTATTATAATCGAGCTTGCCTATGTAGATTTAGATTTCCGTTATAGACGGCATGAACCCCGAGAGACAAACTTATAGGGATTAATTTACAACCCGTAGACAGACGGACAGACAGACAGTATTTATTTTGACCATCATAAGTACATAAACTACAATATAATATTCATTGTAAGGTCAGGGAGGCTCCCATTAACACAATCATATGCCGCTGTTGTCTTAATGACAGCCTCCCTGAAATTACAATGAATATTATATTGTAGTCTATGTACTTATGATGGTCAAAATAATACTGTATGTCTGTCTGTCTGTCTACGGGTCGTAATAGGACGTGTCCCCTATATATATTTTCAAAAGACCCTGTTTATGTCAAGACACCTTTGTGCGGTAATTCAGTTCTTTCATGAACAGTTCTGAACTTAAAAAAACATAATGTGTACGTATTTGCATAAAACGTAATTTCGCGTAATACGAAACACGTAACCTAACCATTGCATTAATCGCGTGCGGCAAAAACTTCGGTAAAACTGCTCCTGCGTCATAGACTTGGCATCATGGAGTAGACGCAGACACCCTAATGCTTATATCTACTCTCATGCCACTATTGATTAACTTGAACATCACATTCTCTCCGACCTTCAATTTTTTTAACAAACAACGAGTATTTGCTAATGCGTAATATAATTTACGTAATGATGATTTTTTAACATTGTTTAAATATTACTTTCACGACTGTCTTCTTGCAAGGCAACCTGTCAGGTGACGGACATTTTGCTAGTACATATCAGAATTGTCGTAACGCAATTTGCGTATAAAGGTCCCCAATTTATCAACGGTCCCCAGTACAATCGAACGAACTCTTAATACAGTAATGAAATTAAACTTTAAAGGTGACAAGAACCGGTTGGAAAAAAGTTAACGTAAATAGAATATATATATATATATATATGTGTGTGTGTGTGTGTACACACACACACACACATATACTAGAAAAACTACTTTAATACATTATATTTATATACAACATAGTACTAAAGCTGGTGTTTTTACACAATTCTATGAATAATATTGTAGTCAATAAATATTAGAAAATACCTATAATTCTATCATACATTATCATGATGCTTAGATGGGATGCAAAGTCGTGGTGTGGGTCTTTTGATAACATTATTTATGTTCTTGAAGAACTGTAACTGCACTGACATCATGTTTATTTTGGATTTATTACGTAAATGTTCACATTAAAATGTGACATGACAAATAATAGATTATATTTTGTTTTACACTTTATAGCAGCGGTATTAAACATGGGGAATTTTGTGGGGTAACAGAAGCTTTTTAAGACATAAATTGTTCAGTAATTAATTAATCATGACATCGCTCTTATAGCACAATATATTGCATAAATGCCATGTAATGACGTACCGGAAGTTACGAACGCCTCATACTGATTGTAAGAATTCCCTTAAAATTAGAGAGGATCCCACCAAGCCATGTCTGTTTGACCCACCGACGCTCGTCCTTGGCGAGGAACAAAGGAGACAGATGAACCATATATCACTTTAAGTCACAACCGTGGAAAATGAATCTCTGAGACGAGCGAGATCATGTTTAGATAACGCCGTTTTAATTGCAGAAGTGTTACTTTGCGTTTCGATTTAATGAATCAACATGTACACCGTTTATCGTGCCAAAATGCATGTACCAGAAAAGAGACTATAAAAGAGTACTGTCTGTTCTCTGAACTGGTTACCACCACGGTGTGCCACGAACCCCAGAATTGTAAATGAATATTAACAATTACGTGGACAACATTTAACTGTGTGTTTGAATTAAAAGAACAAACCCATAATGTTCATGGAAGGGGAGAACCTCTGCATACCATAATTTCAGGTGACATTGTCATACAAAGAGGCCATACATTTATTATAAATTGATATGAGCTATATTGCACATATTTTGGTGAGATAACTTATCTCAACCTCTCACAAGAAAGTAAAATGGTGAATATTTTAACAATTCAAGGCAAGTTTCCCAACTCCCTCCGCATATCCAGTTTTACAAACACCAAATTTACAATAACGATGTCTCCATGTTTTCCAATATGTCAACACCATTTGAAGAGAACGAAGAGCAGTGTACATTTGCTGATGATATCATGCCACAAATACTTTCCATGGAATAGGCCAACCATGGATATTTCCAAAGTTTGGAACATGTTCGGTTGGTTAATCTGAAATTGTCGTTTGTCGCCGGTGACTAAGATAGTCAAAAAAAATTCTTTTTATATCGTCGTCATCATCATGAATGTCATAAACTTTCCTGAGTGACGTCTATTGGCAACGATTCGTCGCTGTACGCGGAAACCGTCCTACATGTCGTCACATTTGCGACACAACTCTCCAAATAATCCAAGTCAGCAGAATCGTACGCTGTGTCTTCCATGTTTACAGTGGTGACACACACACTCACGCATACTCGCAATATCGTTATTTTAACTACGGTGATGACACGCTGAAATTGTTTGAAGATGCGGACGGCTGCGACGGGGGTTGGTTGACTTCCGGATACGAATACGTTATAGACAACGAAGGCATCGACAAGCCGTACGTCTACGAAGCGAAGGTAAATAAGCACACAATCAATATAGTATGTCCCGTCGAACTGAATATCATTTGACGTCACATTAGAGCTCGATCATAATGCCGACAATACACGCAATAATATGTAGGTAAATACGATAAAATATTGGTGTACATGGAAGGTAATATGCAACATGTAGGAAAGTAGACGATTTATGAACATACCCGTGGACGATTTACTATTATAAATTATGCTGTCAACCCGAACCCTTAAACAACACTAAATGTGCATGTTTCGAACACATCTCAACCATTCCGCAGAGTCAGACGGTGAGACACATTCATCAGTTCGTTATGTCATACACTTTCCAATGTCACAGTTTTTAAAAGCAAGAATAACAATTTTAGAACAGCTTACAATTAAGTTATTTGTTTTGTCAATTAAATATTGTTTTTATATTCAGTTGCATTATGTCAACATTTAAATTTACATTCACTAATATACCGATTCAGCAAAGAATTTTATTCGAAGTTATTTTCACACAGTCTCCAAAAGAACGCTACTAGTGTAACGTCTGCTCTTCGGCCTAGCACTGTCCTTGCAACAGTACTGTTCCTCTTATTTTCAGCAAGGAACCTGTCGGTTCAATCGCAGCACTGTGGTTGGCACTTGTCAGTCGTTCAAGCAGGTAAACGCCAGCGAGGAAGCGCTGAAAGAGGCAGTCGCCACTGTGGGTCCTATTGCTGTAGCGATCGACGCATTCTTTACGTCATTCAAGTATGTAACGATCGATGCCAATGTTTTTTGTAGAAATATCAGAATCAATAATAATATTAATAATATCATTGATGACAATACCAGCCATCAGCTAATATCAATACAACAATAATATTGAATAGACACAATACAATATCACGAATATTATCAATATTACATTAATATCATCAACAATAATATCATCATCGAATACATTAATAATAGACACACATTACACACACATACAATATTCCTCATCATCTCTTCGACACACAATAATATCCACAGAGACACACATATACGCGTTAGCACCCCGGCATTAATCCTGATATTATTTAGGGACTACCGTTCCGGGTGTACAACGAACCGTTCTGTTCATTATCCTAATCACGCCGTGCTGGTTGTGGGCTGGTAATTAACGGCGCGAGAAATACTGGCTCATTAAAAATTGTAATTTCATAACCAAAGAGTGTCTTCGCAAACAGCTTCATTCTGATTTTTAGAGCGTGTTATGTTAATCGTTTTCCCTTCACAGACGGTTTGCACCTGGCAAAATAGACCCATTTTGTGGAAGAAATATAACGGTTATATTTTTCTAAAATAAAAGCAGCATAGTTCCTATCGGTTTACTGATCGTACTGGTCAAGCGTGACGACGCAAATTTATTATTAACATGACGTTTGACGTAGGTAGATTTCTGTGATTGCTCTGAGCTACGATCAATTGAGTGACAGTTCACGTAATCCTTGGTCAAATACAGTTTCGTCATGACAGACGTCCGGCACGTAATACTCTGAAAGCACCTATCTGGTTCATAGTATCTGGCAAACAGCAACTAAACCGAATGTGGGCAATTGTTTCGGTCCAGTATAATAGCGTGTTCCTTCGCAGCTGGGGCAACGTCGTGGGCATGACGGATACTTCCATGATGGGTCTGAGACCAACAACATGTGCGGGATCAATCCCATACGCATTTTATCCGATTGTGTGACAACATACACAGCGACATCGGTTTCGTTCATCGTGCCAACCCGGGATTGGCACCAGTTCGTTGGAATACTCCGGAACGATGTACGATTAGATGTGGTGCGGTAGTTTAGTGATCCGGCACCGTGTCAGGTATTTAAACGAATCGTGATGATTTGAAATCTCCCAGCAGCATTGAACCTTGTAATGACGCAATCAATACTTAACCGAAAGTTGAAATAAACGTGCTGCTCATTTGATCTTACGAAGTCAATGCGTAGTTCTTGTTAAGATACG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00112	Peptidase_C1	Papain family cysteine protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000169	Active_site	Cysteine peptidase, cysteine active site	Interproscan
IPR000668	Domain	Peptidase C1A, papain C-terminal	Interproscan
IPR013128	Family	Peptidase C1A	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR039417	Domain	Papain-like cysteine endopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12411	CYSTEINE PROTEASE FAMILY C1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0051603	Biological Process	proteolysis involved in protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf11041_2.8 global RNA-seq network