Gene detail

Detailed information of PE_Scaf10602_6.5 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf10602_6.5	BCL-2 RELATED	Superscaffold5	56873052	56875754	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf10602_6.5

ACATGTATTACACTTCCGGTATGGGATTAGACGAAGTAAACAGAGAACTTTTTACCTCTGGAGTTCCGCCTATAAATCTGTAACAGGATGGATAAAGAAGCTAAAATGAAGAAAGACGACACGATCCGCATTCGAGCAAATTTTAAATTTCTCGTTGAAAACCTGAGGATTGTGGATATTCAAGATTATCTGTTCCAACATAGAGTGTTGGACGAGGACGATATGGAGGAACTTTCGACTGTGAACCAGACACCGAGGAAAGCGGCGAGAAAGTTTCTTCTGATGCTCCCACGGAAAGGACCAGATAGCTTTAAGATTTTCTGCGATTCTCTAGAGGATGCTAAGTGCAGTTTTGTAGTTGAACAGTTAATGAAAACGGACATTTCGTTATTACCAGATGATGATGTTCCAGATTTTAGCATGACTGGAGCAACCAAACTGGAAGAGCTCAAGAGACAATTGTGGATGCAAACAGAACTGTTGATGCGTTACAAGAAAGACATTGAAGAATTGCGCGAGAAAACAAAGGGAACGGACAATGAAAATTCGGCAATGAAAACAAAATTTGACCAACTTGAAAACACAATGGCTGAGAAGGGGTTGACGGAAGAAGACGTGGTTGAGTTTCTGAGAGATTACATGGAGGCGCCCAAGCTTGTGGGTACGAACGTTGATATGGCTGACACCAGCAATAAAATCGACATGGAACAGTTTATGAAGGAAAAGTCTCAACGACGGAGATCAGCTGCAAACATAGGTGCTTTGACAGATGCCATTTCCCGTGCACTGGGGATAGACATAGTACAGTACATGATTGCCACACAGTCAAATAATCTACCACCTGTGCCCACCAGCAAATATGCAAAGACAATGCGTCGGGCAGTGCATGAACTCTCAAAGAAATATGATGACATATTTAAGAAGTTCATTCAAGACCTAAGCATCGATGAGCTGAATGGCTTTCAGACTCTCGCCAATGTAGCTGATGAGTTGTTTCGCGAAGGACCGATCAACTGGGGCCGCATTGTGGCGCTGTATGCATTTGGTGGTTATGTGGCACGTTACAGTGTTTCGGCAAATGACAGCGATGTCATCAACATGATCGGTGAATTCCTTGGCTTCTATGTGTCAAAGAAACTGGGAGACTGGATACGTGAGAATGGAGGATGGGTATGTTGGTGTCATTCCACTTTCTAGGGACATTAATATTAATAAGTAAATAAACTTTATTTAATTTGTCAGAAATGCAGAATTATTACATGGTTTTGTATAATTTTAATGAAAAATAGGATTGTTTTTGTCTTGATGTCATGGTGACTAATCTGGGAAAGTCCCAAACAGGTGTTTCAAAATGTAAGCTTCTAAACATAGCAGTTATTGGCGTGGTTCATTTCTAAATAAAAACACTCATTTGCAAGACTATTCAATCAGTTAAAACCAGATAGTGGCTATAACCAAACCAGTTAAAGCCTGGTTTTAACTGCAATATGTATATAAAAGTGTGATCAGAATACAATCTTCAGAAATATAATTTTGAAATGTGAATGAATAGATGAAAATAACACAATTACAATGATGATTTACCTGGTATAATGCACACTCCTATAACTAAGGAAATACGCTATTCTGTGATGACAGGGATGACTCTTTGACATTGTTATCATACATATTTATATTGTGATTCACTGATGTTCTCTTCCCATCTTTTTTTCTTCAAAATTGCTAATATGTTGTGTTTACAACTGAACTAATGTTTTAAAATACACTAGAAATAGAAACAAACTTCACTACCCCCAGGGTGATTACCCCCCAATTCGTCAGGGGCAGTCGCATGAGTTCGCAAAGTCACAAATACATTAAGCATTAAATGACATTGTATTGCTGGAAAAGTAAATCGCTACAGTGACGCCACCTAGTATGTAAAACATGTTAATGCAAACCTACGAGACCATCCCAAAAGAGACTTTGATCCAGTGCGATCAAGCTTGAATAAATATATAATAATAACTTTACTTGTCCACAAAATGGAAATACATTTTGCACAGAGGAGGGTGCATAATTTACTCCTACTAGGAGAAGAACAGATCTCTTAGTGTGTGGTTTGTTTCAGGATGTATTCCTCGAGCAGTTCTCTGAGCCTACAGGCGAGGGCTCCAACCTGTGGCACGGACTTCTCTTCACAGCCATGGGACTCGCTACACTTGCCAGTGTCATAGCAACGAAATGACTCTACCCCGGAGTCACAACAACCTGTCCATTGTGACCAATTGGAGTGGCCCAAGAGTCATAACAACCTGTCCATTGTGACCAATTGGAGTGGCCCAAGAGTCATAACAACCTGTCCATTGTGACCAATTGGATTGCCCCAAGATTCTTATTATGCCTTGGCCAGTGTCACTGTGATCAACTAACCCACTAACCTGTGTATTGCATGCTGGACAGGGAAACAAATTTGTCATTCAGTTGGACTAACCCATGACTGGCCATCCAGTGGTATTGACCTGGTCAGTCTGGTCACTGATATTGCAGCCTAAGACTGGCCCAGGTCACGTGCTCAACCCCTGAATCCTGGTCACATTATTAAAGGGAAATTTTGTTACGATGCAGAGTACTTTGCATTGTCTCACATATCGTGCTTGGTGATTTGAGATTGTTTTCTGCTTGCAGGAGTGTCTGAGCTCTGGTTTAGCTAATGGCATCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00452	Bcl-2	Apoptosis regulator proteins, Bcl-2 family	Family	Interproscan
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001315	Domain	CARD domain	Interproscan
IPR002475	Family	Bcl2-like	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR026298	Family	Bcl-2 family	Interproscan
IPR036834	Homologous_superfamily	Bcl-2-like superfamily	Interproscan
IPR046371	Domain	Bcl-2, Bcl-2 homology region 1-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11256	BCL-2 RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005741	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0008630	Biological Process	intrinsic apoptotic signaling pathway in response to DNA damage	Interproscan
GO:0042803	Molecular Function	protein homodimerization activity	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0097192	Biological Process	extrinsic apoptotic signaling pathway in absence of ligand	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf10602_6.5 global RNA-seq network