Gene detail

Detailed information of PE_Scaf10099_1.7 in Paraescarpia echinospica Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
PE_Scaf10099_1.7	BLR2807 PROTEIN	Superscaffold6	30088040	30091742	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

PE_Scaf10099_1.7

TGCAGCATTGTTCGGAAAAGACAACTTAGAGCAGTCGACTTCGCTGCCCCATTAAGGTGGACCTTGTCCGGTGTTTAGACGGCCCGGTCGCCAAGGACATATGGCCTTTGTCGGAGAAACTGTCACAGACGCGACCGACGCGTTATCTCGGCGGCCATCTTGGATGTCAGTGAGACGGCGGCGCACCTCCCCCTCGCACGGCGTCTGTCCCCGCCCTGTTCCGCCTTCCTTCACGCTCGCTCGTACAGCGGCCATGTCGACCAATCAGCGGGCAGCCCAGCAAGCATGTCGGCCGCCGGGCTGGATAAAAGGAACGGGAGCTAAATTCAGTAGCAGTCTGAGACTCGGTAAAGTGTGCTGAGTAGGAGAGCAACTCCCTTCAACGTCTTTTGAAGCCTCAGGTGAGTCGACCAAGTTCCACTTCCAAACGACCAACATTTGGAGAGAGGAGTCGTAAAACTTCTACACTTGTTCGTCAGCCTGCTTCTTGCGCACGCGGGTCTAACTTAACATAACATTTCATCCCGCTTCACGTTAAACATTGGTAAGCGTTATTCTAAAATTGAAATTCTTCACAATTACATAGTTCTGCATGATTCGACGACGCTGCTTCAGTTGATGTGGTCGAGCAGCCATTTCTGCGGTGTTTCAATTTGGCGTCTCGTTTGTTGCAGGTTACTCAAAACCAACCAATCATCATGCTTGCTCTACTCGTTGTCATGGGCCTCGTGGCCGGCGGACTCGCCTCCAACAGTTGCACGACTGAGGATCGTAGGGAGATGCAGCTGATGTGGGGCAACGTGTGGAGTGCTCAGTTCACCGGACGTCGTCTTGCTATTGCCCAGGCTGTCTTCAAGGAGTGAGTACTTCTTTTCTTCCTCCAATTACGTTTCCAAATTTTATTTATCGCTATCTGTTTGGCAAGAGGCAGGTTTTTGAAAGAGCGCCTGCAGACATGTTTGTCTTCAAATTCTGTAGTAGAAATGTTTGTATTGAAATGTCAGGCGATGTGATTTTAAACAGTTATATTCCCTGTCACATTTTATATTCGAATCTTCCCGAAGAGGATTTGTTGTGGCTTTCTTTAGCTAATTATGATGTAGTGTTAATTTGTATATCCGAGAAGTGTACATATTTTATAAGTATTACGGAATTTTGTCACATTGATTTATACTATATTCAAATTCTAAATTGAATTACTTACATATTATAATTATGGTTTTTAGTTATATCATTAGCCAAATGTTTTATCGGTGTTATACTCCTTTCATGTAACGTAATCCTTCATGTAAAATATGTTACGGGAAAACCTTTTAAACATGATAACATTATTTACATAAATTCAACCACTCTTACAATATCTCGTCGATACCATTACTTCCCATTCCCGCCAACCCTTGCGAACATGTACTGAACTATGCCGTCCCTGGCGATTATCTGCTGAACGACCAATGCATTTTTGCAGCCTCTTCGACCACGTGCCCGCTGCCGTTAACCTGTTCAAGAACGTCGATGGTGAAAACATCGATAGCAACGCATTCAAGGCTCATTGCATCCGTGTCGTGAACGGTCTTGACTCCGCCATCGGTCTTCTGTCCGACCCTTCAACCCTCAACGAGCAGCTCAGCCACTTGGCCACTCAGCACAAGGCGAGGACTGGAGTCACGAAGGGAGGCTTCGCTGTGAGTACCTGCTTATTATTAGATTTGTTTGTATCATCGAGGTTACATGTTCCTCATTGTTTAACATGGTGTCCTTAATACTGGGATATATATATATATATATGTGTGTGTGTGTAGATGGTACATACCTTCAGATTCTAAACATGCACTATTGGTAATATCGCAAAGTCAGGTTTGGGTTAACATCAGGGCAATTTAAATTTGATGTTTGACGCGTGAGTAGTGATTAATTCTCCAGATGGCGCTCTGTGTGCAATAAACGAGTTGTTTGTGACACATTGGCTGGTGTAAGTTAGTAAAAAGAATATAATGAGTTGACACATAATAATGAGTTGACACCAAAACTCTTGTTTACTATTTGTGGAGTAAGTGTCGCTTCCTCGAGTAAATGCGGGGGGAATCAGTCCGGGAGTTGACGGTGTCGCTTTGTTCCGTTGCAGGCCATCGCCCAGTCGTTCCTGCGAGTCATGCCCCAGGTCGCCAGCTGCTTCAACCCCGACGCATGGAGCCGTTGCTTCAACCGCATCACCGAGGGTATGACCGATGGTCTTCCCGCATAAGCGCCCATCGCCCCGATGCAACGACCTTCCAAGAAGGCGTCGCCATCTCCGGGTCAGACAAACCGCCGGACCTGTTGAGACAATGCGTTCAGAGTATGAAAATCATCTCCGCCACGCAGTGACTGTGAAATAATACAGTGACATTTAAACCGTATTGCATGTTGTGTCTTGAACCGTGTACATAGTGGAAGCGCGTGAGAAGCACCAGCGTTCATGCCGCCTATACGTCGTGTGTGCACGCGCATGTGTATATATAAATTCATGTACATTCAGACTATATTCACCCTTTGATCGAAAAAGGTAGCCGCCAAGCTGACGCGAGAAAGGACGAGAGTTGCGCGGCGCGATGACCCGGCGTGTTTGAATTGGCTTCCAAACATCCGGGTCCCTTCGTGGTCGACGTCACACTCGCAGTTTCATGTTGTCTTGGCTTAAGACCATCCGACGGACTGTACCAGCGATTTTAATTTGGCGTAGATGGAATTAAAACATTTGTGACATGTTAATGCTTGTCTCGTCGCTTCTGTTGTCAAACGTGTATATGAGCAGCCGCTCTCCCACGCAGTTGGTATAGAAAATAAATCTTTAAAAAATAGTAATATAAATCTTGTTCTTTCCCATTGTCATCTAAAGGTACTATCACTATTATATTCTATGCAACGTGACGATGAATGGACATATAGCCAAGAGGAAGATATAGCACGCACGCACGCACGCACGCACACACATACAAACGTAAAACAAGTTTAGCTATAGACAAAGAACTACGGCAGTATTTCGTACAGTTCCCAATATTTCAAAATTATTTTGATAACAGATGCAGCAACATGCCCAACCACACGCTTATGGATATACTTGTACAGGTTCCATGTCCCCATTCACAGCCTCGTTATTTACAGCGCCTCACAATTCCCCCTTCACCATAAGGAGATATTCAGCCATCCATATGTTCCTTTTCAAAGCCAGTATGATAAACAATGATTTAAATTGACTGATATTCCGGCGTACTCTGAAAGTCCTTTGTTTCTAATGTATTATTTGTAAGAACCCAGTTTTGATTAAATGGGTCACTGTCGAATCCATTCTGAATAAACCCAGGCGTTATAGATTATAAATTCACGCGTTCACATGCACACACATTCACACGCAGTCACAAACACATGAATATGCACCAAAAATGCACGCATACACACACACACACACACACACACACACACCCACCCACACACACACACACACACCCACCCACCCACACACACACACACCATCACCACCCTCACCACCACCACCACCACCATCACATCCAAGCACTCACGCACGCACGCATTCACGCATTCACGCACACACGCACACACGCACGCACGCACGCACCCCCACCCCCCACACAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00042	Globin	Globin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000971	Domain	Globin	Interproscan
IPR009050	Homologous_superfamily	Globin-like superfamily	Interproscan
IPR012292	Homologous_superfamily	Globin/Protoglobin	Interproscan
IPR044399	Domain	Myoglobin-like, M family globin domain	Interproscan
IPR050532	Family	Globin-like Oxygen Transporters	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46458	BLR2807 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001666	Biological Process	response to hypoxia	Interproscan
GO:0005344	Molecular Function	oxygen carrier activity	Interproscan
GO:0015671	Biological Process	oxygen transport	Interproscan
GO:0019825	Molecular Function	oxygen binding	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for PE_Scaf10099_1.7 global RNA-seq network