Detailed information of OS493_040278-T1 in Lophelia pertusa

Genomic Location: scaffold_1981:726...2830
NR annotation: KAJ7388031.1, Pre-mRNA-processing-splicing factor 8, partial [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q99PV0Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
Q6P2Q9Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
P34369Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans OX=6239 GN=prp-8 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01398JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027652FamilyPre-mRNA-processing-splicing factor 8Interproscan
IPR000555DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR037518DomainMPN domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11140PRE-MRNA SPLICING FACTOR PRP8Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620Molecular FunctionU2 snRNA bindingInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157Molecular Functionpre-mRNA intronic bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008233Molecular Functionpeptidase activityInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan

Expression pattern
 Expression trend for OS493_040278-T1 global co-expression network
TOP