Detailed information of OS493_039493-T1 in Lophelia pertusa Gene info
Gene IDAnnotationScaffoldStartEndStrand
OS493_039493-T1F-BOX ONLY PROTEINscaffold_1201805513604-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|UBR-box

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02207zf-UBRPutative zinc finger in N-recognin (UBR box)FamilyInterproscan
PF13229Beta_helixRight handed beta helix regionRepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003126DomainZinc finger, UBR-typeInterproscan
IPR006626RepeatParallel beta-helix repeatInterproscan
IPR006633DomainCarbohydrate-binding/sugar hydrolysis domainInterproscan
IPR011050Homologous_superfamilyPectin lyase fold/virulence factorInterproscan
IPR012334Homologous_superfamilyPectin lyase foldInterproscan
IPR022441RepeatParallel beta-helix repeat-2Interproscan
IPR039448DomainRight handed beta helix domainInterproscan
IPR047504DomainF-box only protein 11, UBR-boxInterproscan
IPR051550FamilySCF Complex Subunits and Alginate EpimerasesInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR22990F-BOX ONLY PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for OS493_039493-T1 global RNA-seq network
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