Detailed information of OS493_039263-T1 in Lophelia pertusa

Genomic Location: scaffold_1026:3506...5699
NR annotation: KAJ7314527.1, U5 small nuclear ribonucleoprotein, partial [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q96DI7U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1
Q6PE01U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1
Q2HJH6U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR052234FamilyU5 snRNP Complex ComponentInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44006U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

Expression pattern
 Expression trend for OS493_039263-T1 global co-expression network
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