Detailed information of OS493_039232-T1 in Lophelia pertusa

Genomic Location: scaffold_1003:1160...12709
NR annotation: KAJ7388204.1, DNA ligase 3 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P49916DNA ligase 3 OS=Homo sapiens OX=9606 GN=LIG3 PE=1 SV=2
P97386DNA ligase 3 OS=Mus musculus OX=10090 GN=Lig3 PE=1 SV=2
P16272DNA ligase OS=Vaccinia virus (strain Western Reserve) OX=10254 GN=OPG180 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04675DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050191FamilyATP-dependent DNA ligaseInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR016059Conserved_siteDNA ligase, ATP-dependent, conserved siteInterproscan
IPR036957Homologous_superfamilyZinc finger, PARP-type superfamilyInterproscan
IPR001510DomainZinc finger, PARP-typeInterproscan
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR012308DomainDNA ligase, ATP-dependent, N-terminalInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45674DNA LIGASE 1/3 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006266Biological ProcessDNA ligationInterproscan
GO:0006273Biological Processlagging strand elongationInterproscan
GO:0006288Biological Processbase-excision repair, DNA ligationInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0070421Cellular ComponentDNA ligase III-XRCC1 complexInterproscan
GO:0003909Molecular FunctionDNA ligase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan

Expression pattern
 Expression trend for OS493_039232-T1 global co-expression network
TOP