Gene detail

Detailed information of OS493_038221-T1 in Lophelia pertusa

Genomic Location: scaffold_533:54394...71195
NR annotation: KAJ7350145.1, F-box only protein 11 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_038221-T1

ATGAAAGAAGGGAGAGACAAGCAGCGGAGAAAATGCAACACTGGAGATCATCTGATGAAGGAAAAAGATTGTGGATTGGAAAGCAAAGAGGTCGAGAGAAAATCTGACATGTGTTTAGATTCACGATCAACACGTTTGACAAGAAAGCAAGACACAAAATTAGAAAGTACAACACGAAGCCCAAGTCGAAGGAGATCTTGCAACCTTGTAAACTCCAGTGATCAACGTTCTGCTTCACAGAGAGGCAATTTTAACTGTTACATCAAAGCTGTCCCAGATGAGGTTTTGCTTCTGATATGTTCCTATCTTCAAGAGAGAGAGCTGTGTAGAATGGCGCAAACATGTTCCAGACTCAACTCCATATGTCAGGATGGTTGTTTATGGCGATCACTTTACACTCAAGTATTTGACATGAAGAAGCCCATGATAAAGACATTTGAAGGTGTTTACATTGAACAAGAACCAGAAAACGACTTGTGCTGGAAGAAATGTCTCAGTGCTCTCTATCATGCATACCATGTTCATCCTACCATAGCAAAACAGAACAAAATAAATGCTGGCAGCTGTTCAGGGAGAAAAATAAATTATCATGAAACAATTCAAGAGGCTCTGGAAGCTGTGCAAGATGATGGTGTCATTATAGTACACAGTGGTGTATATGACGAGCAGCTGTCAATCAGCAAGCCCGTGGCTGTTATTGGAGCAGTTAAGAATGAAAGTGATGCAGTTGTTATTCAGTGCGACTCTTCAACAGTTGTCACTTTCAATACTGGCTCAGCGTGCTCCTTCTTAGGACATCTGACTTTTAAGAATTGTCCAAGTAGTGAATCTCAGGCGATTCGATCAGGCTGTATAGAGATTGTTGATGACTGCTCTCCAACGATCTACAATTGCAAGCTCACTAGCCTAGCTAATGCTGGTGCAACAATCTATGTACACGGCAGGGGAGCGAGACCTACTCTGTCCAACTGTCTTATTTCTAACTCAGAAAACGTTGGCATCTTCATCACAGATGGAGCTCAGGGAACATACGAAGACTGCGAGATTACAAACATCAAGCTGGCGGGAGTATGGGTGCGGAATCACGCCAGTCCCATCATGAGGAGAAATAAAGTGCATCATGGTAGAGATGTCGGTTTCTTTATCTTCGACTATGGTCTGGGTTATTATGAAGGAAATGATGTGTACAATAATCGTATTGCCGGTTTTGAGATTCGTTCTCATGCCAATCCAACAGTGGTCGGGTGCAAGGCGCGAGGTGAATTCCTGGAAAATCAGATCTATTCCAATACATACGCTGGTGTGTGGATAACATCACAAAGCAACCCAACGATAAAAAACAACGAGATATACGATGGACAACAAGGAGACAATGCACTTGCTGGAATCCAGATCAGGACTAAAAGTAATCCCATTGTCCGATGTAACAGAATACACAGCGGACTTCACGGCGGAATATACGTGCACGAGGAAGGCATGGGGCTGATAGAGGACAACGAAATCAACAACAACACACTGGCCGGTGTATGGATCACAACAGGGAGTACACCAACACTGAGAAACAACAGAATCCACAGTGGAAAACAGGTTGGAGTTTACTTCTATGATGGAGGCTGCGGAATTCTCGAGGAAAACGAAATCTTCAATCACAAGTACTCTGGAATACAGATAAGGTCTGGTAGTAATCCATGCATTAGGAGAAACAAAATTTGGGGAGGGCAAAATGGCGGCGTTTTGGTTTACAACGGAGGCCTTGGTCTGCTGGAAGAAAACGAGATTTTCGATAACGCGATGGCAGGGGTCTGGATCAAGACCGAGAGTAACCCAGTCCTCCGCAGAAACAAGATTCACGACGGGCGAGAAGGCGGAGTGTGCGTGTTCAACTATGGAAAGGGTGTTCTGGAGAATAATGACATCTTTAGGAATGCCCTGACAGGTGTACTCATCAGTACAGCCAGTTTTCCAGTGTTAAAAAGCAATCGTATATTCGATGGCGGTGCTGCTGGGATCGAGATAACAAACAGTGCTGGCGGAGTTTTGGAGGAAAACGAAGTCTTCAATAACCGGTTTGACGGGATTTGTCTGGCTACTGGTGTTGAACCTCAGCTTAGTAATAACAAGGTGCATGGTAACAGGCGTGAAGTGGAGAAGGCAATAGATTCTTGCCGCTGTCTGTTCCAGGTCTCTGGTAACACGTGCTACCCCATGCATGATTTCTACAGATGCACCACATGCGGTACGTCGGATGGTTACGCTATCTGCGTGAGTTGCGTGAAAGGATGTCACGCAGGACACGAAGTGAAGTTTGTTAGGCGTGACAGATTTTTCTGCGACTGTGGAGCAGGTTCAAGCGGAGTGTTGTGCAAACTGAATCAGCGAAACTGCTGGTCAGTGGCATCTTCTTCTCGGACGCAAACAGCAGTACGAGTGGCCAGCGGTGGTCAAACAGAAACGCCTGCGCATGAGGAGAGAGGGAACCAGGCTCTTTGCGTTTCATGA

Transcript

OS493_038221-T1

Protein

Uniprot

Uniprot term	Description
Q7TSL3	F-box only protein 11 OS=Rattus norvegicus OX=10116 GN=Fbxo11 PE=2 SV=1
Q86XK2	F-box only protein 11 OS=Homo sapiens OX=9606 GN=FBXO11 PE=1 SV=3
Q7TPD1	F-box only protein 11 OS=Mus musculus OX=10090 GN=Fbxo11 PE=1 SV=3

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|UBR-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02207	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13229	Beta_helix	Right handed beta helix region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003126	Domain	Zinc finger, UBR-type	Interproscan
IPR051550	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR011050	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR022441	Repeat	Parallel beta-helix repeat-2	Interproscan
IPR012334	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006626	Repeat	Parallel beta-helix repeat	Interproscan
IPR006633	Domain	Carbohydrate-binding/sugar hydrolysis domain	Interproscan
IPR039448	Domain	Right handed beta helix domain	Interproscan
IPR047504	Domain	F-box only protein 11, UBR-box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22990	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10297	FBXO11; F-box protein 11	-	Ubiquitin system	ko04121	deepkoala

Expression pattern

Expression trend for OS493_038221-T1 global co-expression network