Gene detail

Detailed information of OS493_037696-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_037696-T1	BASIGIN RELATED	scaffold_449	128608	141998	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_037696-T1

ATGGTCAGCAAAAGCATGCAGGGCGCTTATTTTGTGGCAGAGCAAGGAAACCACGATTTTTCCAAGCATATTGGAAGGATCTTTGTTACATCAAGTCCCAAAGACCCTCCGAAACCGATCGTGGATGCAAGGCAAAAAGTGATTCGTGTCAGTCGAAATGTCAACCTCACATGCAAAGCTACAGGGACGAGAATCTCGTACGTTCAGTGGTACAAACGAGCGAGGCCGCTCTCCATGCAACAGCAAGCAGTCAGTAAAGAGTTGAACCTCAATGGAGAAACATGGACCAACACTCTCAAGTTGAAGAACGTGCAGATGAACCAGGCTGGATATTACCTGTACGAGTGTCGTGTGTTTGAGACTGATCAGGATTTCGGGTTTTGGTCAACCCATGTCAAGTTGAAAGTGCTAAACAAAACCGAATGCCCAGAACTTGATGGCACTTTTGCCGATCCGCAGAGAGTCACTGGATATCTCGTTTGCTCGGGTGGCATAAGTACTAGGATGAACTGCACAAAGGGACTAGTGTGGAGAGACGATAAGAAATCTTGTGATACTCCAGCACAAGTCGTAAAATGGGAATCAACTCATTCCCTGGAACTGAAGACCAAAACCGTCGGAGACTCAGTAATATTTAACTGTCGGATGAGCGACCCTAAAGTGAGAGTCAAGTTAAGACAAAAGAGGATCTCGCAAAAGACACGGCAGAAGAAACCGGATGGGTGCAGAATCAGCCGCCTTGGTCAGACGTTTCTGATCCACGCTGTGAATTTAGATGACTCTGGTATCTACTATTGTGAGGCGCCACCGCAGGTTAAGATTACACCAAAAGAAGAAGCTTTCTTGACAATCAATCCAGCTCCATCGTCCGCCATTTACCAGGGGTACAGGAATTTATTTGTATCTTTTGGAAGCTCTTTGGACCTGAACTGTGGAGCTCATAAGATCTTTCAGCCAATGATTTTCCTGGAGATAATTCGCATGGACGGAATCACTCAGCTGATGCCAGATGGCTATAGGATCACCCTGACAGGGAGAATTGTGACCATCCATGGGATGGATCGCACCATGAGGGGCAAGGTTATCTGTAGGGTGATTTCGACATGTAACCAAAGCCAGGCTCAAGAGGATGTCGACCTTGGGTTTCTTTTACCAATTCCACTGAAAGGAACACCACCCATACCAGAGGTGTCGCAACAACTTTCTGTCGTTAAAGAAGGCGAGAGCTTAACCATCACATGTTCAGTCTCTGGTGCAGAAACACACAGCATCGCTTGGTTTAAAGACAAAGAACCTGTACCTAAGAAGCATGTCTTCACTTCAGCTTTTCGTAGTGAGCTCAAGCTTGATAATGTCAGCAAGTCAGATGCAGGTGATTACGAGTGTAGAGCCACAGATTTCGGAGAAGGATATTGGCTGAAATCGGCAACTGTCAAGGTTGAAGAAAAACTTATTTGTTTTGTTCTCATACTTATTCAGGACTCTTCAGATAGTGTGAAGACTACTACAACAACAACTACACCGACCAACCTCCCAACGACTTCGCATGTGATTCCATCACTGACTTCAATAATCCCATATAAGCCAGTTGATATCACATGTAGTTCGTTCCAACCTGACTTTGAGGTGAATTTATGGCAAGAATCAACTCCAGGAACTCTCATTCATAGATCACCCGATGGCGTAACTGTCATTCGTCAAGGCAACGTGTTCACAATAACTCAAGGAAGAAAGAGTGATGAAGGGACATATTATTGTCAAGCTGCGGGTTCCCAGAAAATTCCGGCCGCTATTCTAACGTTTCCGGTTCCAGCCGCTGGTGTGCTGCTTCCTGACAAAGCAGTGTGGATCCCAAACGAATCCAGGAACCTAGATTACCTGGCAGGAGCAGATCTATTCTGCATTGTGTTTTCCAGTGCGCCTGCGGACTGGAGCGTCTGGCTCAAGCGGACTGATCAGGCAGGTCATGCTCAAAACGTCACGGTTAGCAAGCACACAATCAGATCTCTCACGTCTGGCTCAGTTAGAGAACTTGTTCTTCAGATTAGAAATGCTACTAAGCAGGACGCTGGCACTTACATCTGCCAGGCACAGTTTGCTGGAGTCATTCAAGAGGACACCTTGCGATTGGCAGTAACAGGTCTTAAAAAGAGTCAAGTCCTTCTGCATTCGGGATCCCAAGTGGTAAACGAATCGCAGTCGGCAGAGTTCTGGTGCAAAGCAGGCGGATCCCCTCAGCCTAAAATCACTTGGAAAAGACACGGGCAAGACCTCGGAGAATGCAGTCCTCGATGGGGAGCAATCAACTGTCGGACATTCTCCCAACGACACAAGATATCATTCAGTAAAGGGACGTCTTTCCTGAGTGTGCCAAAAACAACGTTCCATAAAGACACTGGACCTTACTCGTGTAACGTTGAGAACATAGTGGGAGTGGAAAATGTCACTCTTCAGTTAACTGTCCAAGTAAAACCGTATATCAAGAAAAACGCCAGTGAAAACCTCATGATAACCCTAGCGAGTGAAAGCGTATTTCTGTACTGTAGCATCGGACGCAGTAGTCCCCCACCAACCCTCTCTTGGTGGTACCAGACTTGCCCCAAAGACGCCACAGCATGCAAACCCTCCTTGCAGGGATGGGGAAGAATGGCAACCGATAACACAAGCTCACTAGTACTGGAACAATTATCGATTCCACCAAGCCAAGACCATGTGATTTATAAATGCATCGCTGAGAACTGGCTGGGCCATGATGACGTAACATACACCATTCTTAGACGACTTGATAATAAGCCCCCAAAGATCATCAACTTTACGACAAAGACATCCGTTAACGCTTCTCAAAATGTAAGACTCCTTTGTGAAACAGAAGGTCAACCTCCATTTGCGGATGTCCAATGGTTCAAAGATGGTGTCATTGTTGGAAGCTGTAGGGGTGAACTACAACAAAACAAAACATGTGTCGTTCACGGCCTGCAAGGAAAATACAGAATTTTCTGGAGAGGATCTGGAGCAGAGTTGATGATTAAGAATGCTTTCCATCCATTTGATACGGGAGTCTTCACTTGTGTTGCTGCAAATGCTGGTGGGATGGACAACAAAACTGTTTATTTGGATATCCATGAAAAGCCGATACTTAACAAGAAAAACGACACAGATTTGCGCGTGCTGTCGTTTAAAGACACCACTACGATCCAGTCCACCGCGTTACGCGGTCACCCGATACCTCACTTCAAGTGGTTTCAGCAACCAATCAAAATCTGCGCGTCAGGATGCAAACCGGACTCTAGAAGATGGCGCCGTGTTCCTCGTCACGTGATCAGCCCATCTGAGCAAGTTCCCTCGAGAATCAGCAGTGTGTTCTTGCCCCCTGCAAAATCCGGGTACTTTTTCCGATGCATCGCCGAGAATTCACTCGGACAGGACGATGCTGTGTTTTTGGTGTACCGAAGCGCACGTTTATCCACTGAACATGCGCAGTTGGAGGATGCTGGAGAGTATCTGTGTTACGGTTATGGCTGGATGACGAACGAGACAAAGATCTCACTGTTAACAGTGTCTGTTACAGAATTTATAGCTCCTATTGTTGTTCTCTCGAACCAAACCATTCACGAGGGAAACACAAACAGCACAGTCTTAACATGCGTCGTCTCATCCGGGTATCCAGCACCAAACATCACGTGGTACAAAGATGGCGTAAAGTTGAGCCTGCTTGCTCTCGGGTCTGCGGATGAATGTAGAATAAATGGATACCATTACATGAAGAATAACCGACCGCCTTTTGCAAACGACCTGGTGATATGTAAACCGAGTCACGTGGAGAACACAGGAGTTTACAAGTGTAAAGCTGAGAATATCAAAGGAAATTACGCGAGTGAAGCGTTTTTGAATGTTCTAGGTTTGTGCAGTAAACTTGCATTTAAACTAAACGGCACTACGTCACGGCATCTTGAAAAATTTCGGCGAACTTTTCAAGTTTGGAGTGGCTCGTCGTGTAAACCATAA

Transcript

OS493_037696-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047	ig	Immunoglobulin domain	Domain	Interproscan
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002557	Domain	Chitin binding domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013151	Domain	Immunoglobulin	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075	BASIGIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_037696-T1 global RNA-seq network