Detailed information of OS493_037257-T1 in Lophelia pertusa

Genomic Location: scaffold_412:107802...111482
NR annotation: KAJ7369670.1, Vesicle-trafficking protein S22b [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZJW4Vesicle-trafficking protein SEC22b OS=Gallus gallus OX=9031 GN=SEC22B PE=2 SV=1
Q7SXP0Vesicle-trafficking protein SEC22b-B OS=Danio rerio OX=7955 GN=sec22bb PE=2 SV=1
O75396Vesicle-trafficking protein SEC22b OS=Homo sapiens OX=9606 GN=SEC22B PE=1 SV=5

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00957SynaptobrevinSynaptobrevinFamilyInterproscan
PF13774LonginRegulated-SNARE-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042855Domainv-SNARE, coiled-coil homology domainInterproscan
IPR010908DomainLongin domainInterproscan
IPR044565FamilyVesicle-trafficking protein Sec22Interproscan
IPR011012Homologous_superfamilyLongin-like domain superfamilyInterproscan
IPR001388FamilySynaptobrevin-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45837VESICLE-TRAFFICKING PROTEIN SEC22BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0005484Molecular FunctionSNAP receptor activityInterproscan
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0005793Cellular Componentendoplasmic reticulum-Golgi intermediate compartmentInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0012507Cellular ComponentER to Golgi transport vesicle membraneInterproscan
GO:0031201Cellular ComponentSNARE complexInterproscan
GO:0048280Biological Processvesicle fusion with Golgi apparatusInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08517SEC22; vesicle transport protein SEC22-Membrane traffickingko04131deepkoala

Expression pattern
 Expression trend for OS493_037257-T1 global co-expression network
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