Detailed information of OS493_037253-T1 in Lophelia pertusa

Genomic Location: scaffold_412:93699...96636
NR annotation: KAJ7369666.1, zinc finger, matrin-type 2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q96NC0Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1
Q9CPW7Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1
P34670Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=6239 GN=snu-23 PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12874zf-metZinc-finger of C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR003604DomainMatrin/U1-C-like, C2H2-type zinc fingerInterproscan
IPR040107FamilyU4/U6.U5 small nuclear ribonucleoprotein component Snu23Interproscan
IPR000690DomainMatrin/U1-C, C2H2-type zinc fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45986ZINC FINGER MATRIN-TYPE PROTEIN 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12848SNU23; U4/U6.U5 tri-snRNP component SNU23-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_037253-T1 global co-expression network
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