Gene detail

Detailed information of OS493_037013-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_037013-T1	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	scaffold_395	113118	118016	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_037013-T1

ATGGTGGGGTCAACAGAGGCTGCTGCGATTAATAATGATGTGAAAACAGTTGCAGATTTAAAGGATCTGCTGTCCTCTAGATGTGGTGTTTCACTTATCAATTTTTACTTGTCATGCAATGGCAAGAAAATGGAAGAGGATTGCCTTCTGTCCTCCTTCAACTTGAGTGAACACTCCAAAATTGTTATGAATCCCCGTATCAAAGGTTGGGCTCCAAACTCTATTCTGATCTCCTTAGCAGCAGGGCTCACAACCAGCATTTTTCAATTTCCTGGCTGGACTGTTGGATGTAGAGATGAATGCATAATAGAAATTGATAATAATCTAGCTGTAAAAATATCACTGTTAAATAAAGAAATTGAAACCATTAACTTCATGGAAATTAGTAATAGTAAATACAACTTAGTACAAACCTTACAACAAATTATGACCAGAACTCAAAGTTACAAAATTTGCTGCGGTATATCTGATACTGTTCTTGTTGAATGGGCCAAGGATCACTTGGAGTCCCCTAAATGGTCAAAAACGCTGTTTGTTGACAATGAATGGTTAATTGAAGGAACTAGTGGGATTTCCAAGTCAATTTTAGAGTTAATGGCTGCAGTGCACTGGGAACCCAGAACAGTGGCAGATGTCAAACTTGACAAGAGTTTTATGACAGTTGGCAAGGTTAAAGATGAGGAGATCTCTGACGATGATGATGATCTTCAAAACAATTTTGAGGACATTTTTGACAGTGATGATGAAAATAACGAGGAAGAAAAAGAGCATTCTCCTACTGCGCAAAGATTCTTTGAAATAAGAAAAACTCTTGACAATGATTTTACCATCACAAATGAACTAGGATTATTGGAGGGTTCATCCTCCTCATATGAGGGCCCAGCTCTGCCACTGATGAAAAAAGGCCTTTTAACCTTGAAATCACAAATGGATCCAACAATTTATGCCTGGTGGAAAAGTGTACTGGAGGTTCTTTGTGGAAGTGATGCTGGGACATATGAGGCCATGGGGTTGTATGTCACCAAATTTTCAAAGCGAAGATGTGTCACCTATGTTGCCAAAGACAATTTAAGCACCACTTTCAACAAAACCCAAGCAATAAGGGCTGAACTACAGAACTTAACAGCCATGAGAAAACTTGAGCTCAACAAATTTTCAAAAAGCCTTGAAGATACATGTAAGTCTTCCGATTTATGTTTGCATTGTGGTGAAATTGGCCATTGGACTAAAGATTGCACAGAGCCCCCTCAGCCACAGTGGCTTGCAAAACAAATCTGCCACAAATGTGGTTTACAGGGACACCTAGTTAAAGACGGTCAGCAGCCCAAATATAGCATTACAAATAAACAGAATACTTCAAACTCAAGTGAATTGAAAAGGCCAAACCTGTCAACACTTAATTTTTTTCAACAGATAGAGCTCAATAAACACCCAAACTATCAATCCTTACCAAGTAGCATTCCCTTAAATTCAGACAGAAGAAATTATTTAAAGCAAAGATCGCCAGAATGGTTTGCTGCACGTAAAGATAAAATAAATGCAAGCAAGGCATCCATAGCTTTGGGTGTTCATGGCTTGCTAAATGCTAGTCAGTACTGGAATGAAGTTAAAGGAGGGAAAGATTCCAAAATTGAAACAAGTAAACTTTGCTCTCTTGCAATGAAGTGGGGAACAGTTTGTGAAGATTCTGCTCAAGTGACATACTTAAATTATCTCAATTTACCTGCTCCACAGGCACAACTTTCCAAAACAGGGACTTGGTTCATCAAGAAAAATGAAACAGAATTTATTGTTGCATCTCCTGATGACATAATAGACATGAATGGTTCCGGATCGAAGCATCTTACAGGAAGAGGTTTAGTTGAATATAAATGCCCCTTCATGGGAGGTTTCCCTAGACCCTATAAGACCATTCCAGTCACACACTTTGTCCAAATTTTGATTAACATGAGGGCCATAAATGCACAGTGTTGTCACTATGTCATGTGGACACCAAAAATAACGCACATTTATCTAATTAAACAAGACATCAATTTAATTTCTGATTTAATTAACATCTTGTGGGAACACTTCTGGAGTGTCGAAGGGAGTTGGACTTTCTCCATCCTTCTAATGTCAGACATAATCAAAAGATGTGAAATCACTGCATCTTCATACCAGCCTCTGACTGAAATTAAGTCTGCTGTTGCTATCTCATCATTATCAGAATTAACTGACTTTACTCCTGAAAATATTCAGAAGGCTAGTGATTTAGACAAGGCAGCAAAAACTGTCAAGAAAAACAAAACAAAAGGCAAAACTATCAGAAAATGTACAAAGTGCAAAAGAACTCTTTCTTTATGTTTCAAAGACAACTGTAAAGAAACAGTAGCTAAGAAATCCAGCAAACTTGTAACTAATAAGGTAGTTGGCAAGTCCCTGATTGCCAGAGAGCAAATCAACAGGAATGAGCAATTTAACATACCACTCAGCTATCAGTCATATGTTAATGGTTCTGAGAGAATTTTAAATTCTTGCCACCATGATGCTTTTCTTGAAGTTCTTTTTAAAATTGTTCAACGTCATCCTGAGTGGTTTAATCACACAAGTTTACTATCAACAACATCAGAATGCATGAAAGTGCTCATCCATTCCTTTCAGCTATATGGAGAAGAAAAGTACCATGCAAGTAAGATGTTGATGTGGAATTTTCTATGCCATAAGACTACAGGAGGTGTTAGGGATTATGCCATTGGCAATCCATGTTCTCTTGAAGCAGTTATTCACAGGTTATCAGACTATCTGACTGCATCTGAATGTGCATTCTACCAATTTAACACTTGTCTTGTAAAAGAATGTTTATGTTTTTCTGACCACAAAAAGTCAGAAAAAACATTCTAA

Transcript

OS493_037013-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR051703	Family	NF-kappa-B Signaling Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46609	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_037013-T1 global RNA-seq network