Detailed information of OS493_036242-T1 in Lophelia pertusa

Genomic Location: scaffold_355:225057...253092
NR annotation: KAJ7388693.1, Low affinity immunoglobulin epsilon Fc [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8WXI8C-type lectin domain family 4 member D OS=Homo sapiens OX=9606 GN=CLEC4D PE=1 SV=2
Q69FH1C-type lectin domain family 4 member D OS=Rattus norvegicus OX=10116 GN=Clec4d PE=1 SV=1
Q5M8X6Collectin-10 OS=Xenopus tropicalis OX=8364 GN=colec10 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF00084SushiSushi repeat (SCR repeat)DomainInterproscan
PF00059Lectin_CLectin C-type domainDomainInterproscan
PF07699Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR035976Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR001304DomainC-type lectin-likeInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR050111FamilyC-type lectin and snaclec domain-containing proteinInterproscan
IPR011641DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22803MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0038023Molecular Functionsignaling receptor activityInterproscan

Expression pattern
 Expression trend for OS493_036242-T1 global co-expression network
TOP