Detailed information of OS493_036000-T1 in Lophelia pertusa

Genomic Location: scaffold_343:137954...176064
NR annotation: KAJ7388722.1, Pre-mRNA-processing-splicing factor 8 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6P2Q9Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
Q99PV0Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
P34369Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans OX=6239 GN=prp-8 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Jab_MPN

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10597U5_2-snRNA_bdgU5-snRNA binding site 2 of PrP8DomainInterproscan
PF01398JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan
PF10596U6-snRNA_bdgU6-snRNA interacting domain of PrP8DomainInterproscan
PF12134PRP8_domainIVPRP8 domain IV coreDomainInterproscan
PF08083PROCNPROCN (NUC071) domainDomainInterproscan
PF08082PRO8NTPRO8NT (NUC069), PrP8 N-terminal domainDomainInterproscan
PF08084PROCTPROCT (NUC072) domainDomainInterproscan
PF10598RRM_4RNA recognition motif of the spliceosomal PrP8DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000555DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR043172Homologous_superfamilyPrp8 RNase domain IV, palm regionInterproscan
IPR027652FamilyPre-mRNA-processing-splicing factor 8Interproscan
IPR021983DomainPRP8 domain IV coreInterproscan
IPR019581DomainPre-mRNA-processing-splicing factor 8, U5-snRNA-bindingInterproscan
IPR037518DomainMPN domainInterproscan
IPR019580DomainPre-mRNA-processing-splicing factor 8, U6-snRNA-bindingInterproscan
IPR042516Homologous_superfamilyPre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyInterproscan
IPR012592DomainPROCN domainInterproscan
IPR012591DomainPRO8NT domainInterproscan
IPR012984DomainPROCT domainInterproscan
IPR019582DomainRNA recognition motif, spliceosomal PrP8Interproscan
IPR043173Homologous_superfamilyPrp8 RNase domain IV, fingers regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11140PRE-MRNA SPLICING FACTOR PRP8Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008233Molecular Functionpeptidase activityInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620Molecular FunctionU2 snRNA bindingInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157Molecular Functionpre-mRNA intronic bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12856PRPF8, PRP8; pre-mRNA-processing factor 8-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_036000-T1 global co-expression network
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