Detailed information of OS493_035857-T1 in Lophelia pertusa

Genomic Location: scaffold_337:148486...151835
NR annotation: KAJ7388747.1, HIV Tat-specific factor 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5RB6317S U2 SnRNP complex component HTATSF1 OS=Pongo abelii OX=9601 GN=HTATSF1 PE=2 SV=1
O4371917S U2 SnRNP complex component HTATSF1 OS=Homo sapiens OX=9606 GN=HTATSF1 PE=1 SV=1
Q8BGC017S U2 SnRNP complex component HTATSF1 OS=Mus musculus OX=10090 GN=Htatsf1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR034393FamilyTatSF1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15608SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005684Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan

Expression pattern
 Expression trend for OS493_035857-T1 global co-expression network
TOP