Detailed information of OS493_034896-T1 in Lophelia pertusa

Genomic Location: scaffold_303:100837...103647
NR annotation: KAJ7376375.1, hypothetical protein OS493_034896 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q67ER4E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1
O15541E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1
Q8IZP6RING finger protein 113B OS=Homo sapiens OX=9606 GN=RNF113B PE=1 SV=3
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR039971FamilyPre-mRNA-splicing factor CWC24-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12930ZINC FINGER PROTEIN 183Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0005684Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0034247Biological ProcesssnoRNA splicingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13127RNF113A, CWC24; RING finger protein 113A-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_034896-T1 global co-expression network
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