Gene detail

Detailed information of OS493_034777-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_034777-T1	HELICASE WITH DEATH DOMAIN-RELATED	scaffold_299	119617	135340	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_034777-T1

ATGGAGCTACACTGTGTTCGTCTACAGCACGATTTGAATTCTTCTACAACATCTTGGACGAAGAACCTCCGAGAAGGAACATCGACCTTCGACATTGGCGGTTGTCAGCAACCAGCGAAACATTGCAATGGATATAGTCCGCATCTCTTTGAGGACAAGGGGAACATGTGTTTGAATGGAGATCCGTCCTCACCGACGAATACGCCAGAATTATTCACGGATGGGGTGAATTCGCCAAGAAATGGAAGCCGCCACAAACTCGTCGCTTTAGGGAATGGCCTAGTTGATTATGACAGGATACCTTGCAATGGCTTTCATCATCAAACGGTTGCGTATGAAATGAGCCCTGAAAAGACTGTCGGGCATGGCAGACCAAGATCTCGGTCAGACCAAGAGGGAGTGATGGGTTCACACCCCAAAAGGATGCATTCATGGAGTGGTCCTGTATCCGAAAATGAAGATAGATTCAACCATGGGTCTCAGTACATCATGACACCCGAGAACTCGAGACACCAAACTGATGTGGAGATTGAAATGCAAAGACATGGTTTGGGCACATCATGTGGAATCGATTCTCTAGAGATTCGTAAGCCTTGTTTGCAGCTGGGTCGTCATCCATCTTTAGAGGTCTATTTGGGGTCCAAAAAAGGCATCACGGATACAATCCCTCGAAGACGGTCGGCCGAATATCATGTCAAGTATCCGTCAAGTCATTCAGCGTCACATACTAAAAACAGTGTTCCCTTGAAACCGAAAGTGCATTTCGCCATTCAAGGGACGTCTGTGAGGAGCCGTTGTGAAAACGAAGCTTTGTCCAGCTATGAATCAAACTCCAGTCTGAATGGGTGGCACCATGTCTCAGAAGTGCCTCTTGAAGACGAAACACAAAGCGAAGACCTTCAACAAAAGATTATTTATGTGTTAACAACGCATGGAGCAATGGAAGCCTTAGACATTGTCAAGGCTGTGGGTCGTGGGACAAGGAATGAAGTGAACCAGTCTCTATTCTCGCTTCATAACAGAGGTCTTGTTAGTGTTGTTCGTACGAGTGATGGCTCTTCCACCGTGTGGACTTTAAATGGGCAGCTTGGTCTTGATAGACGAGCAAGTCCGGGCGTTATTGGTGGAGAAAGGAACAACGAGAAATCTTTTGGAAGAAGTAATCATGAAGAGTTCCATGTACATCTATGGGGGCATTCCTCCGCCGGCGCTTACGATAATAGGCCAAAGAAACAATCTTGTGCTGTTGATGGCGTGAAGCCATGGATGCGATCCAATAGTCATGGTCCTTCTTCAGATGAAAGAAATGCGTGGTTTTACTGCAAATTGTGTCGAGTTTCACTTGTGTCGGAGGCACAATACGAAGAGCACCTTCGCAGCACAAAACATCAAAACAAAGTAGCAAAGTTCAGTGCTATTCCGTACAAGAAGTTCTGCGAGTGTTGCAAGGTTCACTTGAATTCTGAATCACAAGCCAAAGAGCACTTCAGCAGTGGTAGACACGAACAAACTATGGCCAAGTCTCAAAAGGCGCCACCACAACAACATCTTCCGTTGATCACCACTCCTGAGGAATTCATCCCGCAGAGAAGCACAAACACACAGCCGTACGACTATCAACTGGAGTTGTACAGCAAGGCAATGAAGACAAATTCAGTGTGCTTTCTTCCAACTGGAACGGGCAAAACATTGGTGGCTTCCCTTATCATTGGACACATGCTCAGGTTGAATCCATCTCGGCAAGTGGTGTTCCTAGTTGATCGAGTTCTCCTTGTTCTCCAGCAAAGTGACTATCTTAGAAAGGAGCTGGCGCATATGCGAGTCGCGGATGAACGCGGTTCTTTCAAAGGTACCAGGCCTATTCGCATCGGTGCGGTCTGTGGTGAAATGAGGAAACTGGAAGGAAATGCTCGCATCTATGAACAAGATGTTCTGATCATAACCGCCGACTGCTATAGGAATCATCTGAATAACGGAACGCTTCGCTTTGATGACGTATCGCTGATAGTTCTTGACGAAGCACATCACTGTAACAAGGACCACCCTTACAACGTCATCATACGGGACTTTTATCTCCGGGAAGATGCGCTTCTGGGACATCGACCCAAAATCCTGGGACTCACAGAATCTCCAGCCGGAGAAATCTCACTGGACAAAACAACCAAGAGACTACAGAGGCTGTTAGGAAATTTAGATGAAGCAAACCTGTTGGTTGTCACAAGGAATGTCCAAGAATTGGACGAGAAGACCAATAGGGCTCCTCCTGATTGCATCTTAGCTTCATACACAAGCTCTGAACACGAGCTGATGGAAGTTCTTGTGGAATACATCACCAAAGCATTCAACATGGCCGTGCGACTTAGCGAGATGAAGGATTACAAAGACATATTTCAACCGTCATCCGGTGGGCTATTCAGCATCGACGACATCCACCCAGTTCTTGGCGTGATTGATAACATTTTACTTTCACACCCTGAAGCTAACGCCCTGTGCTCGTTGCTGCATTTTCAGCGGATCTGCGAGGCTGTGTGCACGCTTCAGGAATGTGGGGAGCAAATAGCATTTTATCAGATGGCAGAGCTAGGAAATGACAAGTGTCCCCATGGGTTTCATTGGGCAGAGAGTGTGGCTCTTCCCTGCAGCAAAGTCAGGTCATATTTGGATCATTATCTCACGAAAGAGGCTTGCCATGCATGGCCCCCTGTGCCTAATTCTGGAGCAGACCAACTGATTAAACGGTTATTGAACATAAATTGGACTGGAACGAGCGGTCGCGACAATTGCTTGGTCCTGGTGCTAGTCAAGCGACCACGTACAGCACGGTACTTGGCTGAATATCTTTCAAACTGTGAGGAGCTGTTGTTACGCCGTGTAGAGACCACGTTCATTGCAGGGCATGAAAGCGAATCAGCGGATGAAGGAATGTCTTTTCCCACGCAAAGAGAGGTTATCTCAAAGATTCGCGAAGGGTACTATCCAATTGTCGTTACCTCAAGCTTGGCCGAGGAAGGCCTGGACCTCCCAATGTCTAACATGGTGATTCAAATGGATCCGTCAAACTCGGTCTTAGCTCTCGCGCAAATACGCGGCCGAGCGCCTCTGAACGAGGCCAGGTTTGTTGCCATCTGTAGAAACGATGAACAGGCCAAGAAAATTGATGATTTGTTGAGACGGGAAGAAAACATGAAGCGTTCGGCGAGGCTCATAAACGGGTTATAA

Transcript

OS493_034777-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR042371	Domain	Z-binding domain	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003726	Molecular Function	double-stranded RNA adenosine deaminase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_034777-T1 global RNA-seq network