Gene detail

Detailed information of OS493_034539-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_034539-T1	EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED	scaffold_293	394715	422931	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_034539-T1

ATGTGCAAAAGAGTCAAATTGAAATGCTCGTCGGCATTCGCGCAAGTTCTCCTTGGCGCTGCCCTTCTTCAAGGGATACTGATGACCAATGCCTTTGGATATGATTTGGAAAACACATTCGAAACAGAAGTCGACAGCCTCATGCAACTGGAAAATCAACGATCGTTGCGCAGTTTGGAGGAAAGGACGCCTTTGACAATAACAGCACCTGCAGCAGATGCTGGAGTGAACAAGGTGTTTCTACAGCAAGCCATTGGCAGTATTGTGCGGAAGCGTAGCTATGCCGCCTCAGCAGATCCCTGTTTTAGATACCTGGACCAAGTTCAGAAGCGCTGTGCCGATACTAACTCAACTATGACTAAAAGGGATTGTTTTTTGAATTGCGTGCCAAAGTCAACAGATGGTGTTTGTTACAGGCTATGGGAACCCGAGGAGTACGGCGAGACTAACATCCACACCGAGAAGCGATGGTACTATCACTCAGATACTCAGTCGTGTTTACAGTTCGATTATGGGGGTTGCCTTGGTAACCAAAATAATTACGTCAACCTGGAAGACTGCCAAACAAGAAACAACGTGTTGGTAAAGAGAGTTTACTTTGCAAGTGATGCTGCTGGTAATCAATCAGAACACATCAACAGTTATGGCACGTGCTCTGCATTTGGAATCTCACACATCAACACCTTTGACAATAAGACTTTCACCTTCCACGGCACATGCAATTATGTGCTGGTCCGTCTCACATCAGAGGGTCTGATCTCATCGGATAAGTTGAAAGTGGTTCTCAACAATGATGCCAATTGCGACCCTCTCGTACCCTGCCAAAAGTCGATCACGATTTACGCTTACGGCGTTCACGTTGATCTCGGTAAGAGAGACAGCAATGGGAATTTCATGGTGAAAGTTGGCGGGCAAGATGTTAATAAGTTTCCATACCAGCATCAATCAAACCGAGCAGTCTACATTAAAGTAATGTTTCCAGCGGCAGGAGCGAGGCAGTACATTGTAGTGACGACCAAAGACAAGGTTGATATTATTTGGGACGGAGAGCGAATGGTTGACATTCAGCTTCCAGATGAATTCAAGTCTAATTACAAAACATCGGGTCTGTGTGGAACGTTCAATGACGATGGGTCCGATGACTTCATGGATATCGACGGCAAGGTCACATCAACTGCTTATGAATTCGCAAATACTTACAAAGACAACTCGTGCAACTCTCCGCCAGTGGTCCCAAAATCGTGCCCTAATAACGTTCAGGCAGAACAGTTGTGTTCGAAGCTGGAGTTGGGCGAATTTGCAGCGTGTGGAAGCGTAGTGGACAGAACGTCTTTTAAGAATCTGTGCATGAACGACGTCTGTGCCAGCCCGACAGCTAAACACGAAGACGTGATGTGTGACATGTTGTCGCGATACAGCCGACAGTGCGCTTTGAATGCCGTTGTATTAAAATGGAGAAAACCAAACCTTTGCCCGAAACAGTGTCCAGCAAATATGGTATACGATGAATGTGCACCGGGTTGCCCAAGCACCTGTCAAAATTTAGGCATGAAATGCTCGACGAAATGTATGCCCGGATGTACCTGTCCGACTGGCATGTGGTATGATGGTCATAAATGCGTTGAAAGGGCTAAATGTTCCTGCTACCATCGCGAGAAAGTTTATGATCATGACGAAGTTCGTTACGAACCTTGCCAAGTGTGTGAATGCGATGGAGGAACATGGAATTGTACCAACATTCCCTGCAAAGGAACCTGTTCTGTTCTCGGATACACAAATGTCCAGACATTTGATGGGAAACAATACGAGTTGTATCCGAAGGCTTGTGGCTATTCTCTACTTCGTCATTGCCACCATAACGGATCAACACCTGAGTTCGACGTCAGAATCCAAAACAACAATTGTTTTAAAAGTGAAAACAGTCGGTATTGCCAGGGTCAAGACATCTACATCACATTAAAGGGCAAAGTTATCGAAATTAAAAGATCGTCTCTCAATGGGAAGCCCGAATTGCTGGTCGACGGAGGAGTCTTGGATGACCATACGCTCGTGGAGTATGTTGGCGGTACCAGTGTGGTCGTATCTACTGACGAATTACAAATTGTCATCTCCGGGCGAAACATTTACCTGACTGTGGGTCCCGATCTTAAGGATCAAACATGCGGTTTGTGTGGTATGTTCAACATGAATAGCCAGGACGATTTCCACACGTACAATGGCGGTGTCGCTGCCACGGCAAATAGCTTCTTGAAGAGCTGGCTTAACCCCGAGCTAGAAAGGCAGCCAGATTGCGATGTGGGGGATGTGGGGTCGATAGGACTCGGAGAGACTGAGCCCACTCACTCCATCGACTACTGTGGCATGAATTTACAGGCAGAGGTGTCAGTGGAGGAACGAGCCATCGTGTTAAAGGATCCAGTTGGTCCTTTTAAAGACTGTTTAGAAGAGGTTTCATCTAGCTCCTTCTACGATAGAGCCAAGAAGACGGGATGCAGGGACAGTTTTAGCTTGTGCGACGTTGTGGCTGGATACGCAAAAGCTTGTGCAGATAAAGGGATTGTGGTGAAGGACTGGAGGGAACGCATTACGGATTGCGCGGAACCTCAATGCCCAAGCGACCAAGAATTCAGATACTGTGAACTGAATTGCCCTCAAACATGCGGCGATGTCAAAAACCCTCATGCCTGTCTGAATCGAGGATGCATAGAAGGTTGCTTTTGCAAAGGTTCCGACAAGGTGCTGATTGGTAACCAGTGTGTTTCCAGAGCTGTATGCGAAGCAGAAATACGTAAATGCGACAAAGACAACCAGGAATATCGTCAGTCTGGGAAAACTTGTGCCCGGTTGGATGTTAGCGAGGACAGCAATGAAGCTGGATGTCACTGCGTTGACGGATATTACTGGAACGAATTCACAAAGGAATGTGTTGCGAAGGACGAATGTGGATGCACCCATGAAGACAAATACTTCGAAAAAGGCGATACAAATCCGATTGATTGTTCATTTAAATGCAACGGTGCACGAGAATGGGAGCAGGATTCGAAAATCGAGCCTCTGCCTGAATACGAGTGTGCTGCATATGGCCAGGATCAATACCGAACATTTGACGGCAAATGGATCAGTTTTGGCAGCGAAAAATGCGAATATCAACTCATGGAAATAAAGAACAGTCCGAATAAAATCAGCGTGTCGAACGAAGAATGCGAAGACTCACTGGAGCTACAAATGTGCAAGAAAGTGCTCATTGAGACGAAAAAAGGAAGTGTGGAACTTTTCCAGAAGCACATTAAAATGATGTTGAATGATGGAAGGCTTGTCGAATACGCCCCTGGGGACTACCCTGAGCCGTGCAGCAGCAGTGACTTGTCCAACGTGGAGATCTTCAGTGCGGGATTGTTCATTGTTGTGCGAGTGTTCGACCCGTATAATCCCATCCAGCCCTTATTTGAGGTTAAATACGACAAAGGCAACCGAGTCTTTATCACACCGAATATCAAGTACAAAAACCAAAATGAATTGTCTGGAATATGCGGTAATTTCAACGGCAAGGACAGCGACGATTATGATAAGCGGGATGGCGACGAGGCGACAAATGATGGTGATCTTGGTGACGGTTGGGCAAATGAGTTGTCATGCAGCTCTCCAAACGACACTGATTTTGAGGCTGTTTGCGAAAAAAACAGTGACCGAAAAAAATGGGCTTGGAAAGGATGTAATATGATCAATAAAGACAAGAACTTTACTGCCTGTCACAGTGTCGTTCCACATGCTGCCTACTTCAAGGCCTGTCTTCACGAAACCTGTCTATGCAGTAAAGGAGGTGACTGTGCATGCTTCTGTGCAGCAATTGCTTCCTATGTCAGAGCATGCAACCAGCACGGAATCTCTATCCTCTGGCGTCGAGAAGGATTTTGTGGTAAGAGCTGA

Transcript

OS493_034539-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00014	Kunitz_BPTI	Kunitz/Bovine pancreatic trypsin inhibitor domain	Domain	Interproscan
PF00094	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF01826	TIL	Trypsin Inhibitor like cysteine rich domain	Domain	Interproscan
PF08742	C8	C8 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001846	Domain	von Willebrand factor, type D domain	Interproscan
IPR002223	Domain	Pancreatic trypsin inhibitor Kunitz domain	Interproscan
IPR002919	Domain	Trypsin Inhibitor-like, cysteine rich domain	Interproscan
IPR014853	Domain	VWF/SSPO/Zonadhesin-like, cysteine-rich domain	Interproscan
IPR020901	Conserved_site	Proteinase inhibitor I2, Kunitz, conserved site	Interproscan
IPR036084	Homologous_superfamily	Serine protease inhibitor-like superfamily	Interproscan
IPR036880	Homologous_superfamily	Pancreatic trypsin inhibitor Kunitz domain superfamily	Interproscan
IPR050780	Family	Mucin/von Willebrand/Thrombospondin superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11339	EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004867	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_034539-T1 global RNA-seq network