Gene detail

Detailed information of OS493_034505-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_034505-T1	-	scaffold_293	35763	43949	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_034505-T1

ATGAAAACAACCACGATGACAGATGAATTTGAATTTGAATTTGAAGTCATAAATATGGTGCCAAAAGAGTTACCTGTGACAAGGGAAAATGGCGTCATCACAGTGGACCTGACAGGTTATGATCCATTAACCCCAGATGAGTTTCCTGATTTTGCCAGCGTGCCTGATCTTCTGGATCTGAGATTTTTTTCAAACTATCTGAAAGAGATTCCAGATGGTTTCTGTGAAATCCAAAAGCTTAGAACACTGTCGATGTGTTGTAGTGCCATCAAGCCAGACTACGGTCTCTTGCGGCTGCCGAGTCAATTTTGTCGTTTTTCACATTTGGACGAACTGCATCTTGTTGGAAATCACTTTGAGAGCTTTCCCGTGCCTATATATGGGCTTAAAACTGTCAGGAAACTGTACATGGATAACTGCACTCTCACAAAGATTCCAAAAGAAATCGGGAACATGTCCAGTCTTGTCGTAGTGGACTTTAGTTACAATAGTCTTGGTGAGACTGATAGCTTGCCTAAAGAATTTTTTAATTTACCCAATATCAAGGATTTGTACTTGATCGATTGTCAACTGAACGAGTTGCCTCCTGAAATTGGAGGGTTGAAGAACTTGGAAGGTTTAAGAATAGGAAAGAATAATCTTACCAAGCTTCCAGACGAGTTATTCAATCTGGTGAATCTCAGGAAGCTAAATGCTGAGGGAAACAAGATTGCTGAATTATCGCCAAGGATTGGCCAGCTTAGCTCTTTGACACTTCTCTTGATAATGGAGAACAGGCTCACCACTTTTCCAGATGAAATCGAGAATTTGGAAAAGTGCAGACTCATCAATGTGTTTGACAACAAACTCACATGCCTTCCACGATCCATTATCAACATGCCACTGCTTGAGTCATTAATCGTTGATGGAAACAACAATCTGCGCAGTCCACCACTTGACGTCTGCAGTCGCGGTCTGGACAGCATCAAAGGTTATTTTGAATCTCTAGCATCTGTTGATGCTCAAGCTGTTGATTCGCAGCGTCTAAAAGTGGTTCTTTTAGGTGAATCTGGGGCTGGAAAGTCAAGTCTTGCATATGCTTTGGTTCATGCAAAAGCACTTATATACGCAGACCGTGAACCACATAGCACAGTGGGCGTAGATTTCTTCACCTGGCGACCAGTACCTGACGGTGTGGAGTTTCATATTGTGGACTGTGCCGGACAACGGCGATACCAGTTGACTCATCCATTTTTTCTGTCTTCAGAGGCACTACACATCTTAGTCGTGGATCTTTTCAGCTATGAGCCAGCTGAAAGCTGTTTTCGCAGAACTGTTGGTGATTGGTTGGATCTGGTGACGTCGCGCATTTTGAAGCCAAGGATCATGATTGTTCCAACTCATCTTGACAAATTTGACCCCAAAGATGATGTTAGTGTTGTCAGTCGATGTGAAGACATCTTGGATCGTGTTCAACATTACTGCAAGAGCCAGAGAGCTCAGATTGAGTTTGAAATTTCTGAAAAGAAGAAAAAATGCCTCCGCAACCCCGTGCAAGGCACTGATCCTGAGTGGAAGAAGAACAATCCTCCGGTCATTTCTTCGTCACTTCATTCCAGTGATTTGCCTGATCAGCCTTGTCCAGAACCGGGCAACATCGTTATGGTACCCGTCAGCAACATTAGTGAGTTGACGGGCATCATGGCACTGCAAAACGAGATCATCCGCATAGCTAAAGATGGCCAGCTCTTTCCTTCTGTCGGCAGAGATTTGCCCGAAGAGTGGATCAAACTTGAGACGGCACTGAAGGAGTACAGAAAAAATGACCAAGTTCACTGCATGCCGTATGAAGAGTTTGAAAATTTTGCCAAACAGCACACCAATCTTTCAAAGATGGGAGTTCACTCGGCAGTCACCTACCTGGATTCCATTGGGGAGTTACGCTACTACAGTAACATTCCATCATTGCACTATAACGTGTTCATTGATCTCCGATGGCTGGCTAAATTGGTAAAGTGTCTTTTCAGGCATGATTTGCAGAAAACACTGCAGTATGATGAAAATTTCCAAAAATTTGGAGTCATCGTTGGATTTTTTGACGAACTCAAGAAAAAACTTCTGCAGGAAGCAGTATTGTCACAAGCTCTCTTGAGTTGCCTATGGGAGGAAATCAAACTGGATGAGAACATGTTTGTACAGATGGTCGAACTTCTTCATCACCTTGGTCTCGCATGTCGTCTGCCCTCAGAAGATCCTGATGATTTGAATCTTTTAGTTCCCTGGTTTTTGAGCGAGTATCCTGGTGCCGTCGAAGGTTTGTCCGAAAACCTATCTACAGACCAGGAGGAGATTAACTTACTCTTCATGATGGCGTACTTGCCTCCTGGTTTGTTTGATCGGTTACGTGTTCGCTGCTGTTCTCTCGAGTTTGATTACTACAATTGGAAGGATCATGTGTTGTTGTTTGTTTATGACCATCGAGTCCTTGTCCGGCAGCATAATTACCCCCCAGGAGCTGAGCCTAGCTCACCGGCCATTTATATCACAGGCAGAGGGCCAAGGGCTGAATTGGGCACTCTGTGGGAAGTTCTGCTTAGACTTGTTCAGGAGACAGATGCGCTGCTTAAAGAGTGGCAAAGACTGAGTGTCCAGCGCTGTTCATTGTGCCCCCCCTGCACACAAAAGAAGAAGTCTACACCATGCCTTTTCCCGTGTAATTGGATGAGCTTCGCTGCAACAAGAATTCAACATGGAACACAGACCAAGATGTGCAAGCTGGGGACGGCACTTTTCAAGGGAGAGAAGTTTGGTGTGAATCTCATCCATCCTCCTGCTGATGTTGTTAAAAGATTGCTGGATTCACCCGGGCCATTGATGTCAGAACCAGTTTCAGAAGATGTCTCTGACACTCTCATAGCAAACCTCTCTCAGCAAATGACCAAGCATTGGAGGTTGGTGGCAGTGTATTTGGGCTTCAAAAATGATCACGTAGCCACTTTTGATGAAGAAAATTCTTCCATTGCTGAAAAGATCATTGCCATGTTGAATGCATGGAAACACGATCAGGCAAAGAATGCGACAAGAAGCAATCTGATGATGGCTTTGGTGAAAGCTGCAAGGAAAGACCTGGCTGAAAAAGTTCGCACCTACAAAGAATAA

Transcript

OS493_034505-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR025662	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR050216	Family	Leucine-rich repeat domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48051	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_034505-T1 global RNA-seq network