Gene detail

Detailed information of OS493_034402-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_034402-T1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	scaffold_289	417774	437592	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_034402-T1

ATGTCTCTTTATGGTGTGGAATCCACACCACACACCAAGATTGGAGCGTTGTGTGCAGACATGCTGACCAAGGATTCAGCTGCTATCATAACGATCATTCCATACTACACTGGAGCAGCACCCGTCAGACTAGAGAACTGTACTCAGCTAGAGATCTGCTACAAACAGCTCGGCTGCAAGGAACACTGTTTACATCCTAACCAGTGCGTGTTGTTCGCGTGGGACGAACCTTCAGCCACGGAAGAGTTTGTTTGGTTTGTCAAAGGATCTGAAAACCAAATCAAAACTGATTTGTCAGCGACGGGTTATAATGATTTTGAGCATGATGGTAAGAAGTTTTACTGGGCAGCATTCCTGGACGGTCTGCAGCGAGTACTGCTGATCATTGATGACTTTACACTGGCTTTCAGAGCTCAAGTGGAACAAAAAGAGCGGTCCTCCCAGCGCATTACTTTGGGTCTTCAGGGCGTTGGCTTGTCTCTTGTCAACAATGAAAAGAGTATTGAAGTCGCCTACATTGGAATCAGACCGAGTGATGTTATCTGGGAAGAGCAGAAGAAGAAAGGACGGTGGAAAGCCCTCAAGGTTCGAATCAGTGATGAGCTGGAAGCTGCTTGGACTAGAATACAACAGGATCTGTCTGTGGAAGCCACGCCCAATTATATCTACAAGACTGGTGACATGGAGGTTGATTTTCAACTGATGGAGATTGTGCGGCCCACACGTCAACCAATCAGAAGAACGTTCACACCAGGAGTATTTCTAGAGTACAGTGCGTCACCAAACGAACTGAATTTTTTTGCCAAGATCAACTCGGTTCAGATTGATAGCCAGGTCCCAGGCGCTACCTTCCAAACTGTTCTCTTTCCAGTCCCCCCTCCTAAGTCTCTCGCTGCTGAAAACGCACCAAAGCCGTACATTGAATTGAGTTTGGTAACTAAACAAGAGGAACACACACATGTGAATGAAATCAAGTATTTTAAGGTACTCATTCAGGAGATGGACGTCAAAGTTGACATGGGGTTCCTCATGGCCCTTCTTGGACTCTTCTCTTTTGACACCATTGATAGGAGCCAAGAGGCCAGCCAGTATTCCTTAGACAAACAACGGGTCCATGACAAGCTAGGAGAGGCGTTTGCTGTTCAGGCTGCCTTGAGTGATACAAGGAATTTCTTTGATTACTTTCATCTGTCTCCACTGAAGATTCATCTGAGCTTCTCTCAGCTGGGCGGTGCAGCAGATGGTGATAAGTCACGGACTCATATTGGCGGTAGTTTTCTGAGCTTGTTACTACAGAGTGTTGGAGTAGCAGTCACTGAAGTACAAGACGTGGAATTCAAGCTTGCATACTTTGAAATTAAGGACAAAGTGTACTCTCAACAACAGTTGATTGACGTCGCTGTCAAGCATTACTCCAGTCAGGCCTTGAAGCAGATGTACGTGTTGGTATTAGGGCTTGATGTGTTAGGTAATCCATTTGGTTTGATTACTGGCCTGAAGGAAGGAGCGATAGACTTCTTTTACGAGCCGTACCAGGGTCTCATCCAGGGTCCTGGCGAGTTTGCAGAGGGCTTAGCGATCGGTGCAAGAAGCTTGTTTGGACACACTGTTGGTGGTGCAGCTGGCGCAGTGTCGCGTATAACTGGTACGCTGGGCAAAGGTATCGCGGCACTCACAATGGACGATAAATACCAACAGGAGAGGAGACAGGCCATGGGAAAGAAGCCGGTTAATGTCAAAGAAGGACTCGCCAGGGGTGGGAAGGGATTACTGGAGGGCGTTGTTGGAGGTGTGACGGGGATAGTGACCAAACCAATGGAAGGCGCAAAAGAGGCCGGTGCTGCCGGATTTTTCAAGGGACTGGGTAAGGGTATGGTTGGTGTGTTGGCGCGTCCCGCCGGAGGATTGGTTGACTTTGCCAGTAGCACATTGGAAGGAATCAAAGGGTCTGCCAGTACGGGTATTGAAGTGCGGAAATTAAGACCTCCAAGATGCTTCTACGCTGATAAGGTTATCAAGCCTTACAATAAACACGAGGCCCGAGGAAACGCTATACTCCAGGAAACGAAGAAGACAAAAGCTGCGCTGGTGGATGATACATATTTCTGTCATTGTCATCTTAATGCCAAGAAAGCACTGATCATCACGAACAAACACATCGTGGTTGCTGGTAAAACCGAAGTGTTTGAGACTTGGGAGTGTGACTGGATGTGTGAATTCCGAGAACTCGCTGAGGATCCCACAACTGACGGGAAAAAACTCATCCTTAAAGTCCCGGACAAAGCCAAAGGGAAAGGCATTTTCAAACGCGCGTCAGCTGTAAGATCCATTTTGACACCCAGTCCAGATGTAGCTCAGTGGCTGGTAGGAAAAATCAGAGAAGCCCGATCATAG

Transcript

OS493_034402-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09333	ATG2-VPS13_C	ATG2/VPS13, C terminal domain	Domain	Interproscan
PF16909	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan
PF21679	VPS13_C	Intermembrane lipid transfer protein VPS13, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015412	Domain	Atg2/VPS13, C-terminal	Interproscan
IPR026847	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR031645	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan
IPR049424	Domain	Intermembrane lipid transfer protein VPS13, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053	Biological Process	protein retention in Golgi apparatus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_034402-T1 global RNA-seq network