Gene detail

Detailed information of OS493_034401-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_034401-T1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	scaffold_289	370302	416070	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_034401-T1

ATGAATGTTAAGCCTGGTTCGGATTTAAGTATCCCTAAGATTTTCCTGAGCCTTGTCTTGCAAGAGATATCTCTAGTTTTGATGAGGCAGCAGTACCATGATGTGATGGAGTTACTGGAGTCCTTTGACAGAATGGCCACAAATACCATGTTCAGAAAATACAAACCAAATGTCCCTCTCCATGGTCATGTCAAACAGTGGTGGAATTATGCAATCACAAGCATCCTTGAGGAAGATGTAAGGAGGAGATTAAGAAATTGGTCATGGACTCACATAAAGGAACACAGGGATCTTTGCAGGCAGTACAAGGACCTGTATAAGAAGAAGTTACTGCAAGACAAACCTTCTGATGCATTACTAAAGGAGCTAGAGGCACTTGAAAGTAAACTAGATGTTTTGAATATCACAATTTGCAGACGCCAGGCTGCTTATGAGGAAGCTGCAGCTTTGAGGAAGAAGAAGATGAAAGCAGAAGAGAAGAAAAGTGGTGGATGGTTTTCAGGTTTCTGGGGCTCCAGTAAAAAGCGCAAGAAGGAGGAGGAAAAATCAGAAATTTTAACTGCAGAGCAGAAAAAAGAAGAACTGGAGAAGTTATACTTTGCTATCGGCTACAGTGATGGAGAAGTCATCACAGCATTTCCTAAGGAGTATGTGGAAAATAAAGTTTTGGTCCATTTGAAGCAAATAAGTGTGGCTTTGAGAGACGATACAGATGCCAAGTCAGTTGATGTTGCAAGACTGAGTTTCCAGGACCTTTTTACAGAGCTTTCTCAAAGACCATCGGCACAAGCAATTAAGGTGACAGCAAAGGTGGACCAGATGAAGATGTTTGGTTCTGCTGCTGCTGCTGATGGAAAGATGCCTCTCATGATAACCTCACAGGATGAAAAAGCAGAAAGCCATCTTGCTCTTTTCACGGCATCCTTTGAGACCAATCCTTTAGATGGAAAGTGTGACCAGAGAGCTGAAGTGTCCTCTCAACCAGTCAAAGTTTGCTACGATGCTAACACAATAGAGCATGTCATCACGTTCTTTCAGCCTCCAAAAGATGTTCATCTTCAGGAGCTCTCAGCAGCAGCATTCTCACGACTGGAAGATCTAAAGTCAGTGTCCAAAGCAAACTTGTCTTATGCAATTGAACATCACAAGATCACAGATATAAATGTTGATGTCAAGTCTCCATTTATCATCATACCAGAGGGAGGCACCTTTAAGAATTCAAGCAATGTCTTGGTGATTGACCTTGGACACCTGAAGATCACTAGTGATCCAGAGCAGGAGAGGATTGTGTCCACCAAGGACCTTAGCTTGGAGGATTTGGAATCAAAGTGTTATGACAAGTTCGATTTCAGACTGGAAGACCTTCAGATTCTCATTGCAAAAACAGGTGAAGACTGGCAAGCTGCAAGGAAGCAGGCCAAATCTGAGATGCATATCCTGGATCCCATGGCAATTGACATGAAGCTTGAGAAGGCATTAAATCCGGATGATATAAGACTTGCACAAATTAAAGTATCTGGAAGTCTTCCTTCTGTTAAAGTTCACGTGTCTGATGAGAAGCTTCTTCAAGTTATCAAGCTTGCCACGAGCATCCCAATACCAGGAGGTGAAACAGCTGTGGATCAAACAGATACCAAACGAGTGGATGTTCCTGGAGATGATCGCCGATATGCTGCAGTGCGGGCTCACAGTGATGTAACGAATTTGGGGACTCTTCAAGGTGGTGCTGAAGAACAAGATGAAGAGGAAGAAGAAGAGATGTTTATGACTCCCCCTGAAACACTACCAGGGGAGTCCAAGCTAGAGCTAGCTAAATTAGAAGCAAAGGAGGCCTTGGCGAAGCAAGTTAAAGTTTCACTTAAGTTTGAAATAGAAGAGATTGCAGTTGATGTCAGCACCATTGATAGCACAGGAAAAATGACCCCTTGTCTTGTACTATCCATCAAAGGCTTGGGCACAAATGTCATAATGCACCCTTGGGACCTTACAGCAAGTGCCTCTTTGTCCTCCTTGGTGTTGCAAGAGATGACCTATGGACCTGATGGAGGTCCTCTTTATCTTGTACAAACCCCTGTTGGAGCAGAGCTGCTGTCAGTCAAATTTGTGAAGGTGGAATCAGACCATCCTGAATACAGCTCAACATTCAAGTCCACCCAGCAGTCTGTTGTTGTGGAATTCTCTTCATTACAAGTAAAACTGCATCAAGAAGCTTTACTAAACATCATCGATCTTTCAACCAAACTGTTGCCTCCCAGTGAAGAGAGCCCACCTCTGCCTGGAGTGTCAGGTGACAGCACAAAGACAGAAGGCCAAGAGGGCAATCAGGCATCTCAGGCAGTTGTACCAAAGGGCAAAAAGAAGAAAGAGGACAAAGATGAAATACAGATTGAAGTAACAGCCAAACTTGGAGGAATTGGCGTTACAGTGACGTCTGTTGACGGTGATTTGAGTCACGTAATTGTTGGAGGATTGTCAGCCTACTGTGTTGTCAGAGACAGCAGGACAGAAGTTATTGCCAGTATGAAAAATTTGTCAGTGCTCGATTCCACTCCTGGTGCTCTCTATCCAAAGATAGTGTCCATTGTGAACCAGGAAGTGTTTAACCTTCAGGTTGTTGCATACAATGGAGCACTTTCTGGTAGCAACTTTAGAAACATGGAAGCTGCTGATGTGAAATTCCAGATGGGAATTGGATGTATTAGAGTTGTCTTCCTTAACAAATTTGTTATGAACCTCTTGGAATTTTTGAACAAGTTCCAAAAAGCAAAGGATGCAATGGAGTATGCCAGAAAAAGTGCAGCTGAGTCAGCCACAGCAACAATTCAGAATCTCCAAACTCAAAGCTCCAGAATAAGCCTGTCTGTGTCCATCCAAGCACCTCTGATAGTCATCCCTGTCAGTTCAACATCTCATGATGCATTGGTTGCAAACCTTGGTCACCTCAGTGTGGCAAATACTTTCAATTTGGCACATGATGGGGAGGATCCTGGTGGAAGTGATGCTGTTGTTGTAGACAACATGGTGGTGGAGCTTAGTTCTGTGCAATTATCGAGGGCTGTAATGACAGATGGAGAAAACATAGGAGCTACCCGTCTTGTCCTAGAACCAGCAAGTCTAGCAGTATATGTAGCACGCAACCTATCTCCTTGGTACCATGATGTACCAGATATTGATGTTATGGGGAGGCTGCATGCTGTCAAGTTGTGTGCTGGTGAAGATGACATCAGAACTATACTGGGAATCTTGTTCCAGAACCTTAGTGAAGGAGTCACTCCTCCTCAGATAGTTGCAGAAGAGATCAGTCCCATTGCTCAGCAAGCGCTTGATTTGGAAGTTGCCAGTAAGAGCCTCAGTGTTGCAGCACCAGTTACAAGTGAAGACGTGTGGGACTCAGTTAAGTTTTCGTTTAAGATTGAAGAAGTTTCTGCTGCAGTGTTCTGGAAGGAAAGTGCTAAGCCGTCAGGCAACAAGTCCTCCAGAGAGCCAGACTGCTGTCTGGGACAGTTCTCACTTGTTCAAGTAGCGGCTTCAGGAAAAATCAGGTCCAACTCCGCAATAAGTGCCAATGTGACATTAGAGAGTTGTATTCTTGATGACAAAAGACCGCAGAGTGAGCAGGGAGTTACAAGGATGATTGAGAGGTTTGATGGAGGATCAAGTAAAGTAAAGAACATGATAGATATCCAGTTCCAGCAATCTGCTACTCAAGACAAAGCAATTGTGATGGAGATACAGAGTTTCCATGTGGTAGCGAATCTGGAGTTTCTATTGGTTCTGTCCAACGTGTTCATGTCTGCATTAGCGACTGATGAATCAGTGAATAAGACACTACCGGCCCCTCCACAGTCCTCCCAGGCAGTAGCAACTAAACACAGCAAGTCTGCCACAGTTAAGACTACTGATGAAGAACCTCCACAAATCACCGTTCAGATCTCCATCAAAGACCCAGAGATTGTCCTGTTAGCAGATGCAAGAGACAAGGACACTAATGCTTTGTTCTTGAAGAATGCAATTGATTTCCACTTTGTCCAGGGTCATGGCCAGCAAAAGATGTCAGGTTCTGTTTCAGATATTGTTATCACCTCCGCAGCTTTTGACAAGGAGAGACGAGATTCAACTAAGTCAAGGGTTCTCCAGCTGTCCCAGATCTCGCTTGTCAGCTCTGTACCAGAAGGCAGTAGCATGCAAGTTGACATATCAACTGGAATGACTTACATTCATGTGTCACCACCCACGATAAGGACATTGACAGCTTGCCTTATGTCATTAGCTCCAGCCAAGAGTGAAGACGACGAAAATAAATCAACTGAAAATGCTGTAGAACTGTGGAGTGAAAAGCCAATCACGACTGAGGATAGATGGTATTTATCTCCAGTTCCAGAAGACCAACTAGTCCCTGGTAGACGTGTACTGGCCCGATCGTTGGCCAACCAGAGGAATTACGATGCAGGATTTATTTACACTGCTATGGACGTCATGATTTATGTTCAGTTTGATAACTCCATGACCTGGTTCTATGACACAAATGACATTGCTGCCATCGTCATTGACAAGAATCCTGACCCTAAAGATGTAGTTGTTGGTACACAAGTGGTGGCCAAGCGTCCAAACGAATCATCACACGTTGAGGGGAAAATTATTGAAATAAACGAGGAGGATGGGAAGATGGCATATCGGATTGACTTTTGGGATGGTGTGGGAAACTGGAACACTTTGGAACAGATTCGCGTTCTCACCACCACCAAGCCTGGAGTTCCAAAAGGGCAAATTGCAGTGTCAACCATCGTATTTGTCAGAGGCAAAGATGACATGTACAGCAAAGGTTTTATATCCAGCAAAACATACACCAAGCTGGTGATACGAGTCTATGGCGAATTGATAGGCCTTAGCATAGTAGATGCAAACGACAGTGCTGCAGTTGTACCAGATGTTGTCCCCGATCCAGCGTCTTTAACTGTTGGTAGAACAGTTATTGCCACATATGACACTTTTTTGTGGGAGGCTGGAAATATCGTTCAAATAAGGAAATTGGATGAGACAGGACAATACATTTATCGTGTCAGGTTCATTTCTGGTGGAGACACGTGGGTTTTCAACATCAACAACATCCGCATCCTGATGACAAGGAAACCTAAAGTTCCAGAAGGTGTGTTAGACGTTGGTACAGTGGTGTGGGCACATACTTCCAAAATACGGTACTACAAGGGATTTGTCTCGTACAAGGGAACCAAATTACATGTTGATTTGTATGATGGAGACAAATTTCTCTACGAAATGAAGGACGCGTCACACAGGGTCATCCCTGATGTTCCACCAAAAGCTGCAGATATCAAACCTGGGACAAGGGTGATAGCCAATTACAAGAACAGACCACGGTATTTCAGTTCTACAGTGATGGAAATAGATGCCTCTGACCCAAGTGAACCAAAGTATCATCTAAAGTTTGATGATGGAGATGAGATATGGGATTCGCTTTACCAGTTGAGACTTCTACCCAAAGAGGTTCAAGTTGGAGGCGAGGAGAAGTCTCCAGACCACATTGATGCTAATGAGGCTGGGAACAGTAAGGCAGAATTGTTGGTGTTTGAAATGGAAGGATTTGACATCAAGTTGGAGGGTATGTTTGGTGGTCAAGTCATTCCATTGCTATCTGTTGACGGATCCATACAAGGCGAAGTGAAGAATTGGTCTTCAGCTTTGTCAGTGCATGCAGGAGTTGGCATTATTGGGAACTACTTTAACGAGAATGTGTCTGAATGGGAGCCTCTCATTGAACCAGTAGAAGATGAACATTCTGCTTATCGACATTGGGAACTCAATCTTGATGTTTCATTGGCAAATGGTGGTAGTGATAACAGCAATTTAGATGACAGTTCTGAAGCAGCCATGTCTCTGGCAGTTCATTCAAAAGATGAACTACAGCTGACTGTGACCAAAACGTGTCTGGATGTCTTCACTAAGCTTGGAGCAGCTTTTAAAGAAGCTGTTACTCTGGAAGGCACAGGAGTGATAGCTCTGGAAGACATTCCACCCTTTCAAATATGGAATGAGCTTGGCATGGAAGTCAAGATTCGACCAGGAAACAAGTTTGAGAGTCCAGCTGGTGTTGGTCAAGATGGAATGGTTGCAATCCACCCTGGTCAAAGCCTTTCCCTTCGATTTGGCAAAGGACTCGATAGAAAAAGCAGCAGATATGAGAGAAGTAGTAGTGCCTCTGGTGTCGGACCCAGCATTGGTATCGAGGTGCAAGGCTATCATGAGCTGAAGACCATTTCTGTAAAACAGGCACGAGTTATCTTGCACAATGCCATTCCAAAAAAGTTGGTAGAAAGCATCATAATAATGCCAGAAATGAGCACCATAAATGAAATGGTACTGGTAACGGATCTTGACCCCGATGAGCTTCTTGCAGGATTAATTGTATCAGTTGTTGTCCAAGTTGAGAGTGGAGATGGGCAGAAAACAGTAACCATAAGGTCACCATTACAGGTTAACAATCACTTTCCAATCCCAATGGATTTGTTGTGCAAGAAAGAAGAACAATTTTCCCGGATCACAACAATTCAACCTGACAGTCTCTTCAATGTTCCTCTTATATTGGCTCACAAGGCTGGACTCTACCTCAGACCTGCAGGATTTGGGTATGGAGTGAGTACTAGCCCCTTGTTGTGGAACAAGCTGGCATCTGAAGGTCATTCGTCCATTGGCTGCCCACCACCAGCTGGCGAGGGTCCACCTTTTCATATTGAGGTTGTTTGTGAGCAAGTGTCATTTAGTTCAGTTAATGGATCCTTGGAACATGCGCCTAATTACATCCTCCACATCTACCCACCAGCTGTTCTTCACAACTATTTGCCTTATAATATTCACTATGCATCACAAGGTTTGCCTGCTGTTGAACTCAAGGGTGGTGACAAGTGGCCTTTGTTTTCTGTCAGTCTCTCTAAAAGAGTCATCCTTTATCTCCAGGTTGACAACTATCAACGCAGCATGTGGAGAGGACAAATTGACCTGTCAAAGGGAATGGATGAGCTCACAACATTCACATTACAGTCAACTCAGGTGGCAGCTTATGGAAAGTACCTGGAGCTGGGAGTGTTTGCCACATTTGAAGGCACAATGAATATCACGCTGTACAGTCCTTACTGGATGGTTAACAAGACTGACCTTTACCTTGAATACATGGCTTCTGATGACGAGACCGTCATCCCTCATCCAGCTTCCTTGACTGAGCCAGTAATGTTCTCGTACCGTGGGAAAGGAAATCTCTTTGCCAAGAAGACGGCCCGTGTTCGTCTAGCATCTGCTGAATGGTCCAACAAGTTTTCTCTTGATGCGGTAGGCAGTGGTGGAGCTATTAAAGTCAAGAAAGATGGAAAACTGCACGAGGTTGGTATGCAGATTTCCTTGTCTTACTTCAGTTTAACCAAGATAGTGGAATTCACACCCTTCCACCTGATAAACAACCACACAGAGTACACCGTGTCACTGTCAGACTCACCAAGCCAAGAGTCCGCCTGGGTAACAGTACAACCAGGAGAGTGCGTACCATTCTGGCCAGTTTCATGTCCGTCTAAGGATCTGACCATCAGGGTTGATAACAGTAAAGAAGTGTCACCAAGCTTTCACTTCCAACCGATGTCACAGTGCTGCTGA

Transcript

OS493_034401-T1

Protein

OS493_034401-T1

MNVKPGSDLSIPKIFLSLVLQEISLVLMRQQYHDVMELLESFDRMATNTMFRKYKPNVPLHGHVKQWWNYAITSILEEDVRRRLRNWSWTHIKEHRDLCRQYKDLYKKKLLQDKPSDALLKELEALESKLDVLNITICRRQAAYEEAAALRKKKMKAEEKKSGGWFSGFWGSSKKRKKEEEKSEILTAEQKKEELEKLYFAIGYSDGEVITAFPKEYVENKVLVHLKQISVALRDDTDAKSVDVARLSFQDLFTELSQRPSAQAIKVTAKVDQMKMFGSAAAADGKMPLMITSQDEKAESHLALFTASFETNPLDGKCDQRAEVSSQPVKVCYDANTIEHVITFFQPPKDVHLQELSAAAFSRLEDLKSVSKANLSYAIEHHKITDINVDVKSPFIIIPEGGTFKNSSNVLVIDLGHLKITSDPEQERIVSTKDLSLEDLESKCYDKFDFRLEDLQILIAKTGEDWQAARKQAKSEMHILDPMAIDMKLEKALNPDDIRLAQIKVSGSLPSVKVHVSDEKLLQVIKLATSIPIPGGETAVDQTDTKRVDVPGDDRRYAAVRAHSDVTNLGTLQGGAEEQDEEEEEEMFMTPPETLPGESKLELAKLEAKEALAKQVKVSLKFEIEEIAVDVSTIDSTGKMTPCLVLSIKGLGTNVIMHPWDLTASASLSSLVLQEMTYGPDGGPLYLVQTPVGAELLSVKFVKVESDHPEYSSTFKSTQQSVVVEFSSLQVKLHQEALLNIIDLSTKLLPPSEESPPLPGVSGDSTKTEGQEGNQASQAVVPKGKKKKEDKDEIQIEVTAKLGGIGVTVTSVDGDLSHVIVGGLSAYCVVRDSRTEVIASMKNLSVLDSTPGALYPKIVSIVNQEVFNLQVVAYNGALSGSNFRNMEAADVKFQMGIGCIRVVFLNKFVMNLLEFLNKFQKAKDAMEYARKSAAESATATIQNLQTQSSRISLSVSIQAPLIVIPVSSTSHDALVANLGHLSVANTFNLAHDGEDPGGSDAVVVDNMVVELSSVQLSRAVMTDGENIGATRLVLEPASLAVYVARNLSPWYHDVPDIDVMGRLHAVKLCAGEDDIRTILGILFQNLSEGVTPPQIVAEEISPIAQQALDLEVASKSLSVAAPVTSEDVWDSVKFSFKIEEVSAAVFWKESAKPSGNKSSREPDCCLGQFSLVQVAASGKIRSNSAISANVTLESCILDDKRPQSEQGVTRMIERFDGGSSKVKNMIDIQFQQSATQDKAIVMEIQSFHVVANLEFLLVLSNVFMSALATDESVNKTLPAPPQSSQAVATKHSKSATVKTTDEEPPQITVQISIKDPEIVLLADARDKDTNALFLKNAIDFHFVQGHGQQKMSGSVSDIVITSAAFDKERRDSTKSRVLQLSQISLVSSVPEGSSMQVDISTGMTYIHVSPPTIRTLTACLMSLAPAKSEDDENKSTENAVELWSEKPITTEDRWYLSPVPEDQLVPGRRVLARSLANQRNYDAGFIYTAMDVMIYVQFDNSMTWFYDTNDIAAIVIDKNPDPKDVVVGTQVVAKRPNESSHVEGKIIEINEEDGKMAYRIDFWDGVGNWNTLEQIRVLTTTKPGVPKGQIAVSTIVFVRGKDDMYSKGFISSKTYTKLVIRVYGELIGLSIVDANDSAAVVPDVVPDPASLTVGRTVIATYDTFLWEAGNIVQIRKLDETGQYIYRVRFISGGDTWVFNINNIRILMTRKPKVPEGVLDVGTVVWAHTSKIRYYKGFVSYKGTKLHVDLYDGDKFLYEMKDASHRVIPDVPPKAADIKPGTRVIANYKNRPRYFSSTVMEIDASDPSEPKYHLKFDDGDEIWDSLYQLRLLPKEVQVGGEEKSPDHIDANEAGNSKAELLVFEMEGFDIKLEGMFGGQVIPLLSVDGSIQGEVKNWSSALSVHAGVGIIGNYFNENVSEWEPLIEPVEDEHSAYRHWELNLDVSLANGGSDNSNLDDSSEAAMSLAVHSKDELQLTVTKTCLDVFTKLGAAFKEAVTLEGTGVIALEDIPPFQIWNELGMEVKIRPGNKFESPAGVGQDGMVAIHPGQSLSLRFGKGLDRKSSRYERSSSASGVGPSIGIEVQGYHELKTISVKQARVILHNAIPKKLVESIIIMPEMSTINEMVLVTDLDPDELLAGLIVSVVVQVESGDGQKTVTIRSPLQVNNHFPIPMDLLCKKEEQFSRITTIQPDSLFNVPLILAHKAGLYLRPAGFGYGVSTSPLLWNKLASEGHSSIGCPPPAGEGPPFHIEVVCEQVSFSSVNGSLEHAPNYILHIYPPAVLHNYLPYNIHYASQGLPAVELKGGDKWPLFSVSLSKRVILYLQVDNYQRSMWRGQIDLSKGMDELTTFTLQSTQVAAYGKYLELGVFATFEGTMNITLYSPYWMVNKTDLYLEYMASDDETVIPHPASLTEPVMFSYRGKGNLFAKKTARVRLASAEWSNKFSLDAVGSGGAIKVKKDGKLHEVGMQISLSYFSLTKIVEFTPFHLINNHTEYTVSLSDSPSQESAWVTVQPGECVPFWPVSCPSKDLTIRVDNSKEVSPSFHFQPMSQCC

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06650	VPS13_VAB	Vacuolar-sorting associated protein 13, adaptor binding domain	Domain	Interproscan
PF16908	VPS13_ext_chorein	Vacuolar sorting-associated protein 13, extended-chorein	Repeat	Interproscan
PF16910	VPS13_mid_rpt	VPS13, central RBG modules	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009543	Domain	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Interproscan
IPR026847	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR031642	Domain	VPS13, middle RBG modules	Interproscan
IPR031646	Domain	Vacuolar protein sorting-associated protein 13, extended chorein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053	Biological Process	protein retention in Golgi apparatus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_034401-T1 global RNA-seq network