Detailed information of OS493_033591-T1 in Lophelia pertusa

Genomic Location: scaffold_268:293999...302750
NR annotation: KAJ7370245.1, Vacuolar protein-sorting-associated protein 36 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7ZVK4Vacuolar protein-sorting-associated protein 36 OS=Danio rerio OX=7955 GN=vps36 PE=2 SV=1
Q86VN1Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens OX=9606 GN=VPS36 PE=1 SV=1
Q6DDF4Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis OX=8355 GN=vps36 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|PH|GLUE

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11605Vps36_ESCRT-IIVacuolar protein sorting protein 36 Vps36DomainInterproscan
PF04157EAP30EAP30/Vps36 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR021648DomainVacuolar protein sorting protein 36, GLUE domainInterproscan
IPR040608FamilySnf8/Vps36 familyInterproscan
IPR037855FamilyVacuolar protein sorting protein 36Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13128VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0032266Molecular Functionphosphatidylinositol-3-phosphate bindingInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0000814Cellular ComponentESCRT II complexInterproscan
GO:0031902Cellular Componentlate endosome membraneInterproscan
GO:0032509Biological Processendosome transport via multivesicular body sorting pathwayInterproscan
GO:0043328Biological Processprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathwayInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12190VPS36, EAP45; ESCRT-II complex subunit VPS36-Exosomeko04147deepkoala

Expression pattern
 Expression trend for OS493_033591-T1 global co-expression network
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