Detailed information of OS493_033547-T1 in Lophelia pertusa

Genomic Location: scaffold_267:432207...438555
NR annotation: KAJ7376665.1, Vacuolar protein sorting-associated protein 4B [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O75351Vacuolar protein sorting-associated protein 4B OS=Homo sapiens OX=9606 GN=VPS4B PE=1 SV=2
P46467Vacuolar protein sorting-associated protein 4B OS=Mus musculus OX=10090 GN=Vps4b PE=1 SV=2
Q0VD48Vacuolar protein sorting-associated protein 4B OS=Bos taurus OX=9913 GN=VPS4B PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09336Vps4_CVps4 C terminal oligomerisation domainDomainInterproscan
PF00004AAAATPase family associated with various cellular activities (AAA)DomainInterproscan
PF17862AAA_lid_3AAA+ lid domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015415DomainSpastin/Vps4, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050304FamilyMicrotubule-severing AAA ATPaseInterproscan
IPR003960Conserved_siteATPase, AAA-type, conserved siteInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan
IPR041569DomainAAA ATPase, AAA+ lid domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23074AAA DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0007033Biological Processvacuole organizationInterproscan
GO:0016197Biological Processendosomal transportInterproscan
GO:0140603Molecular Functionobsolete ATP hydrolysis activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12196VPS4; vacuolar protein-sorting-associated protein 4-DNA repair and recombination proteinsko03400deepkoala

Expression pattern
 Expression trend for OS493_033547-T1 global co-expression network
TOP