Gene detail

Detailed information of OS493_032831-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_032831-T1	SENTRIN/SUMO-SPECIFIC PROTEASE	scaffold_250	123521	129879	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_032831-T1

ATGACGCTCATGAATGTCTTGTCAAGCTCTTGGATTTTCTCGTGGATCCAGAAATTGAAAACTAACCCTCAACGTGCTGTAGTGTCTAATGCAAGAAAATGCCAGCAATGTGCATGGGCGGAGGATGAGATGCAAATATGGCCTCATTTCATAAATAGTGTACCAATTGTTGGATGTAAAACTGTTGACGAAGCTCTTTCACAACTTAAAGCAAGTGGAGGCGAATTTGCAACAGCTGAGCTGGACATCTCTTCTCTTTGCGCCAAGCCGACAAGTGATACACAGCGCTATCGACTAAGGAGCGTCATTCTTCACAAAGGGAAAAACAGTTCTTGTGGACATTATACGACGATAGTGAACAGAGAAAATCAATGGTATTTATTCGATGATGCCAATGTCTCCCCTACGGAATTTCAAAGAATCGCAGACGAATTGGAGCGTTGTGGTTACCTACTGTTCTACGAACTGATCGAGGGCAACGATAAATGCAGTCAAAGAGGCGAAGAAAATGCAGTGGATGCGAATAGGAAAGAGGACGATATCACGAAAAGTAGCGCCTTTGAAAAATCGTCACTGTGCAGGATGACGGAAGACATGATGGAGACGGTAGCAGAAGAGGCATCTAAAAATACAGACCTAACCGGCACTGTTCGTACACTGAGGGGAGCTCTCATTCCATATCTGTCACACGAAGATCTACTGCAACTCATTGGAGAACGTGGATTATTGTCAAGACAACTTACTAGCTTCGAAATTGAACCCGAAAAATGTACGTTCATTAGCAGCCAGCAGTTCTCCATTTTGCGAAGTGCCGTGGAAGTCTTTGAGACCTTTAAGAGGAATGAGGACGATGAACTCCAAGGGTCGCTGGAGAGGGTGATTGAGCAGGTGATATCAAAAGCAGAAGGAGGCGGAATTCATTACTTTGTTGTTGTCAACTTCTCGGAACAGGAAGGACACTGGTGTCTTTTGTATGTTTGTCCAAGAGATAGCCGAATGGTGTACCTGGATCCCCTTGGAATTGGTTTAAAGGCTAAGCAAACTTTCGGTGTAGCAAGGTATTTGTTCCAAAGAATGTTGGAGAAGGAAGGGGAAGAGGTTGATTGGGAAATATGGAAGTTTGAAAACCTTAAGTGTGAATGGCCGTTACCAACGCAAAAGACCGAGGATGACTGCGGAGTTTTTGTGTGTATGTATGTTCTCTGCATTATTCTTGGACAAGGGATTTCTTTTTCACAGGTGGATATCCCTGAGCTAAGGCTTCAAATGGCTTACGAAATTTTACAGCAGGAGTTGATCTCAGAAACTAAGCAAAGTTTCCAAAGGAAAGCGCCACTGTGTCCAAGCGGAGAGGAATTGACATTGACAGCTGCGCGGCTTCACTTGAAGCCAACAGAGAAGCTCCAAACTGGCGCTGGCGCCGTTAAAGAACCACTTGAGATCGCGATAGACCGACTCAAACGCTTAGTTGATGACGGAAGTCAAGAGGAAGCAGAAGAAATAAATGAGATGGACGTAGAAGAAGAATTCCGCTTTACCCCATCCATCAAAGAAGCCCAAGAAAGAGTTGCTGGCATGCGTGATTATCTATTGTCTATCGCCAACACACCGTTCTCAGAAGAATTGCCCCCACCGCATTTAGAACGTCATCAGACCTACTTGTTATTCGGTGGTTTCCTTTACTCGTTCAAAAAACTAGAGACAATGCTTCTGGGGACGGAGTGTTTTCCATTTCCGGTAATAGATAAAATATTGCATTTCGTACACGATCTTTTTCAATCGGAAACAAAACCATCCATTAAACGCCAGACTGGTTCAAAAATCAAATTTGAGCCTTTGATAAAAGAAACATCCTTTTTGGATTATGACCTGTCGAAAACCATTCCAGGCCATATATCCTACGTGAGTCATGTTTTGTGGCACGAGGCCATTACCAAACTCGTAATGGATCTCCAAGGATGTGACTATTTAGAGGCCACAGGTATCGCTCTCGGAGAGGAGAAACCAACACGCACTCCCTACGGTTTGAAATGGGAAAGTTTGGTCGAAGAGGCAAAGCGGAGGAATACCAACCCTACCACATCCAAAAGGAAGCAGGCGACGCCCAGGAGGGTCTTCAGAAAGAAATAA

Transcript

OS493_032831-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|ULP\|ULP
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12606	SENTRIN/SUMO-SPECIFIC PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0016926	Biological Process	protein desumoylation	Interproscan
GO:0016929	Molecular Function	deSUMOylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_032831-T1 global RNA-seq network