Detailed information of OS493_032066-T1 in Lophelia pertusa

Genomic Location: scaffold_232:481739...493724
NR annotation: KAJ7370500.1, DDB1- and CUL4-associated factor 13 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6NVS5DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis OX=8364 GN=dcaf13 PE=2 SV=1
Q7ZYQ6DDB1- and CUL4-associated factor 13 OS=Xenopus laevis OX=8355 GN=dcaf13 PE=2 SV=1
Q803X4DDB1- and CUL4-associated factor 13 OS=Danio rerio OX=7955 GN=dcaf13 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF04158Sof1Sof1-like domain FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051733FamilyWD repeat-containing DCAF13/WDSOF1Interproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR007287DomainSof1-like proteinInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22851U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11806DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13-Ubiquitin systemko04121deepkoala

Expression pattern
 Expression trend for OS493_032066-T1 global co-expression network
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