Detailed information of OS493_032056-T1 in Lophelia pertusa

Genomic Location: scaffold_232:375601...381366
NR annotation: XP_020611660.1, S-phase kinase-associated protein 1 isoform X1 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3ZCF3S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=1 SV=1
P63209S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=2
Q5ZKF5S-phase kinase-associated protein 1 OS=Gallus gallus OX=9031 GN=SKP1 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|SKP1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03931Skp1_POZSkp1 family, tetramerisation domainDomainInterproscan
PF01466Skp1Skp1 family, dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036296Homologous_superfamilySKP1-like, dimerisation domain superfamilyInterproscan
IPR016897FamilyS-phase kinase-associated protein 1Interproscan
IPR001232FamilyS-phase kinase-associated protein 1-likeInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR016073DomainSKP1 component, POZ domainInterproscan
IPR016072DomainSKP1 component, dimerisationInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11165SKP1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0097602Molecular Functioncullin family protein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03094SKP1, CBF3D; S-phase kinase-associated protein 1-Chromosome and associated proteinsko03036deepkoala

Expression pattern
 Expression trend for OS493_032056-T1 global co-expression network
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