Gene detail

Detailed information of OS493_032005-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_032005-T1	CARRIER DOMAIN-CONTAINING PROTEIN	scaffold_231	233576	246165	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_032005-T1

ATGGATTTCGAGAACGAAGGATGTCTTCATGACATTTTTGAACGGCAGATGAAAAATACTCCAACAACCGCAACAGCTGTTGTGTCCGGCGATGACCGCTCTCTCTCGTTCTCCGAACTTGATCATCTCACGGACATTTTGGCCATGAATCTCAGGCATAAAGGAGTGAAAAGGAACAGTGCTGTTGGTATATACCTTGAACGATCGCTCGAATACCCTCTAGCTTACATCGCGATTTTGAAAGCCGGCGGGGCCTACATGCCGTTGGAACTCTCCTATCCCGAATCTCTTCTTCATTCGATTCTGGAGGACGCAAAGCCCACGGCAGTCATAACAAGTGAAAGTTTGAAAGAGAAACTGCCTAGCACGGTGGAGGAACCACTGGAAAAACCAAAAGGGATATGTTGCCCTCATCAGGGTGCCGTCTTCTCATACACCTGGCGATTCAGCAATTTTCCTTTCCAATCAGATGACCGGGTGGCTTGTAATGTGTTCTTTGTATGGGAGCTTCTGCGACCCCTTCTGAAGGGAATACCATTGTACGTCATTCCTGACTCTGTTATTTACGATCCTTCTCTACTGCTGAAGTTCTTGAAAAAGCATGGAATAACAAGAGTCCTATTTACTCCATCTCTTCTGGAAACACTTTTGACCTGTGAAGATAGCGACCTTCCTGATCACTTGTCCTCTCTGAGAATCATCTGGTTGTGTGGAGAGGTCGTGACTACAGCTCTCAGGGACAGATGCATGAGGACATTGCCGTGGATCAAGCTGTTAAATCTCTACAGTGTCTCCGAGTGTCATGATGTGGCTACTGCAGACCTTACCAATATGCCATTTCAAATGAACTTTCAGATTCAGATGATAACAAACGGAAATTTTGTCCAGTTTGGGAAGCTGCTACCTGGAGTTTATGTTGCCATCATGGACGAGAACCTGAAGCCGCTACCAGTGGGTCTTCCTGGAGAGATTTTTGTTGGAGGGCCTGCATTAGCTCAAGGTTACTTGAACAGACCAGAACTGAATGCCTACAGGTTTATAGAGCGTCCGCGTGAAGTGCCAGAGATTGCTGGGCCCAGGCTCTATCGTACGGGTGACTGGGGATACTTGCTGTCGTCTGGCATGTTGGAGATTTGTGGCAGATGTGACTCAATGGTGAAGATCAGAGGATATAGCATTGAAACACAGGCTGTTGAAGGCTGCGTTGTTACAGCTTCCCATGGTAAACGGGTGCAGTGTTGTAGCTCACGGGGAAGAAGGAGAAGACAAGTACTTGGCAGCTTATGTTGTTCCAGAAGGAAGGCTAGCAAAAAAGACATCCGAGCAGCATTAAAGACAAGGCTTCCATTTTACATGATACCATCTCATTTTGTTCTCCTAGCAAGTATTCCTGTGACGCCTGCTGGTAAGCTTGATAAAAAGAAACTACCTCCCATTGGCTCAGCTGAAACTGGCGAGGAAAGTTTGCCTAGCACTCCAACGGAGCGTGATCTTGCACAACTTTGGTGTGAAGTGCTAAACATATCCAACATTGATGTACAAGAAGGGTTCTTTGATTTAGGAGGACACTCTCTTCTAGCGACACATTTGCTGGTGAAAGTAAACAACAAGTTTGGCATAAACCTGACAGTGCAGGATTTGTTCACCTGCCCAACAGTGGCAGAGATGTCCAAAATGATTGATGAGTTACAGAAAGACGGCACACAGAGTAACAAAGATTTGTCAGAGGACAAGGTTGACCTTCTGGACGAAGTGAACTACCATTCAGCTTCAGAGGGATTTGTAAATATGGACATCATGTTGAGAGCATTTTGGCGCTCTGCAAACTTTAAGAACACTCGTCGCTGGATCAGAGGGCGTGTCTTGTTGACTGGTGGGACTGGATTTCTGGGAGGGTTCTTGCTACGAGATCTCATAAGGTTCACCAAGGTTCATATTTTCTGCATTGTACGCGAACAACGCGATGGTGTGGATGGAAAGGAGAGGTTAAAGAAAGCTCTGCAGAATTTTAGGATCCTCCCACAAACTAACGACCGTCAGCAAATGACTGAAGAGGAACGGTACCTAGATTATGGCTTTGAGCATAGAGTTACTACAGTGAAAGGTGACGTTTCATTAATAAAGCTCGGAATGAGTGAAGAGGAATATGTTCACTTGTCATCGGAGATTGACTTCATTATTCATGCTGCTGCAGCAGTGAATATGGTTTATCCATATCAGGCTTTGCGAGGTGCAAATGTTCGAGGAACCCAAACGTTCTGCTTTTTGCTTGCACTAGTAAAATCAAACCGTTACATTATATCAGCACGGATGCTGTGTTTCCACATGGATTGTCAAATTGTTCAGAAGATGCCGACATGA

Transcript

OS493_032005-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF00550	PP-binding	Phosphopantetheine attachment site	Domain	Interproscan
PF07993	NAD_binding_4	Male sterility protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000873	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR006162	PTM	Phosphopantetheine attachment site	Interproscan
IPR009081	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR013120	Domain	Fatty acyl-coenzyme A reductase, NAD-binding domain	Interproscan
IPR020806	Domain	Polyketide synthase, phosphopantetheine-binding domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036736	Homologous_superfamily	ACP-like superfamily	Interproscan
IPR042099	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44845	CARRIER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031177	Molecular Function	phosphopantetheine binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_032005-T1 global RNA-seq network