Gene detail

Detailed information of OS493_031917-T1 in Lophelia pertusa

Genomic Location: scaffold_229:297742...300165
NR annotation: KAJ7389388.1, Nuclear cap-binding protein subunit 1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_031917-T1

ATGTCCAGGGAGAAAAGGAGATATCATAGTGAAGATGAAGAAGGTAGAGCTCGGAAACGGAGAAGAACAACGGAAGTTGTGGACATCGAAGACCGTCTCGAATCTCTCATCACACGTGTCGGAGAGAAAAGTACATCATCACTGGAAAGCAACCTGGAAGGTCTTTCCAGTGTGCTGGAAGCTGATTTGCCAAATTACAAAGAACGCATCCTCAAGATTATTTGCACATGTGCTGCAAATCTACCAGAGAAAATAACTGTGTACAGCACACTGGTAGGACTTTTGAACGCAAAGAATTACAGCTGTGGCGAGGAGATTTTGGACATGCTTCTGGAAAATCTCACAGAGATACTGAACGCTGGCCAGTTTGACAGAGCTAGATTAATGGTGCGATTTCTTGCTGATCTGGTGAACTGCCGAGTTCTCATGCCAAGTGGACTTCTGGAGTTTTTTGACAAGCTTCTGGCTGCCACCATGGAAGAAAATATTCCACAGGTTCGATCTGACTGGTTTGTGTACACGGTACTATCTGCATTGCCCTGGGCTGGAAAGGAACTTTCAGAGAAGAAGAGCCAGGAATTTGAACGGCTGTTATCGACCATTGAGAGCTACGTAAGTCAGCGACCCAAGATTCACATCCCTGCGCTGCGAGTATGGTCAACTGATGAGCCTCACCCTCAAGAGGAGTACTTGGATTGCCTGTGGGCTCAGATCAAGAAGATGAAATCTGATAATTGGCAGGAAAAGCATATCAGGAGGCCTTACCTTGCTTTTGATGATGTTCTCGGAGATGCTTTGCAGCATACCCTTCCAACATTCACGCTTCCGCCACAAAAGGACGGCATGGTGTACCCACTTCCACATGTGGTGTATAGAATGTTTGATTACACTGACGTACCAGAGGCCGGCCCATCCATGCCAGGGGCTCATGCAATTGAAAGATACCTAGTGGAGGAGGGTATTCAAAGAACAATTCATGCCCATTTCAAGGACCGAAAAGAATGTGCTAACCAGCTGTTCAACTTACCTGGGACATCTAAAGTGCCATTTCATTACTGTCTCATTGAGGTGATCTTTTCAGAGATGTTCAGACTTCCAAACTCACGCCATGCTCAAATATTTTATGGATCTCTGATTATTGAACTATGCAAGCTACAACCAAACTCGATCCCTGGTGTTGTTGCCCAAGCAACGGAATTATTGTATGAGAGATTGAACACGATGAACACAACTTGTGCAGAAAGGTTGGTCTACTGGTTGTCGTACCACCTCAGCAACTTCCAGTTTAAGTGGGGCTGGGAAGAATGGGTTTCTGCCACCGAGACTGGATTGGATTCACCTCAATGTGTATTCCTGAATGAACTTTTTGAAAGTATCAAAAGATTATCATACCATCAGTTCCTGGTTGAGAACATTCCTGAAGGATTGCATACTCTTCTTCCTGTTGCTCCTGTTCCAAACTACAGATTCAAAGATGAAGAAGGGGAGTTACCAGGAGCAGATGTCGCCAAACAGCTTCTGGAAGCCATCAGAGCAAAGAAAGATGTAGATCAACTCCAGACCATTTTGAACAACATACCAGCAAATGCAACCGGCCAGGAAGATCTGAATGCTGATGTCCCAACGATTGACCACACTTTTCCACTATTACGACTTGACGTCTTGCTTCATGTTGTACTCAAACTTGGTGCCAAGTCTTTCAGTCATTCTTTCAGTGCTCTGACAAAGTTCCACAAACTTCTAAAAGCTGTTATTGTGAACGAAGAAGCTCAGATCCATTGCCTAAAGATTGTGAACGAGTTTTGGTCAACAAACCCTCAGATGATGGTGGTGTTGATAGATAAATTGGTACGTATGCAAATCACGGATTGTTCAGCAGTCGTCAACTGGCTTTTCTCCAAGGACATGAAGGATAACTTCACAAAGTTGTATGTGTGGGAAGTCATGACAAGCACATTGAAGAAAATGAGCAAGCACACCAACAAGGTGTCGTGTGAAGTTCAAGAAGCCAAAGAAAAGCTCACAAAATTGGAAGAGAAAGCAAAGAAACAGACGGGAGAAGCAACTGGTGAACCACAACCTGAACCTTGCACAGAGGAAGAAGTGGATAAAAAACAACAACAGCTTGACGAACTTACAGAAAAACTAGAAAATGCTCAAAGAGAGCAAAAACAACTCTTCCTTATCATTTTCCAGCGCTTCATCATGATCCTGACAGAACACATTGTTCGTTCAGAACAACATCAGGTGGATGTTGACAGTCATTGGTTCAAGTATACCACGGAGAGACTTCAAGAAATTTTGATCACGAATCACCACCAAGTTTTTCAGTACTTGAGTTCTCTTGAAACCCTTCTGTTCACATCTGATCTGGATCCGCGCATTTTGAGCCTTTTCAATCATTTTAAAGCTTTGCGAGCATAG

Transcript

OS493_031917-T1

Protein

Uniprot

Uniprot term	Description
Q5ZJZ6	Nuclear cap-binding protein subunit 1 OS=Gallus gallus OX=9031 GN=NCBP1 PE=2 SV=1
B4JM29	Nuclear cap-binding protein subunit 1 OS=Drosophila grimshawi OX=7222 GN=Cbp80 PE=3 SV=1
B4NC41	Nuclear cap-binding protein subunit 1 OS=Drosophila willistoni OX=7260 GN=Cbp80 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09090	MIF4G_like_2	MIF4G like	Repeat	Interproscan
PF09088	MIF4G_like	MIF4G like	Repeat	Interproscan
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015174	Domain	MIF4G-like, type 2	Interproscan
IPR015172	Domain	MIF4G-like, type 1	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027159	Family	Nuclear cap-binding protein subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12412	CAP BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016070	Biological Process	RNA metabolic process	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005845	Cellular Component	obsolete mRNA cap binding complex	Interproscan
GO:0005846	Cellular Component	nuclear cap binding complex	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12882	NCBP1, CBP80; nuclear cap-binding protein subunit 1	-	Spliceosome	ko03041	deepkoala

Expression pattern

Expression trend for OS493_031917-T1 global co-expression network