Gene detail

Detailed information of OS493_031349-T1 in Lophelia pertusa

Genomic Location: scaffold_214:549454...574006
NR annotation: KAJ7370613.1, hypothetical protein OS493_031349 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_031349-T1

ATGGAGTGGAACTTTCTCTCCGGAGCTGGAGCTGTATTTCTTAGCTACTATTCTTTAAATTTTGTTCTGCAAATTCTTCATGGAATAAGAGCGTTTGTTCTTCCATCCCTTGGCATAAAAAGGAATTTGAAGAAGTTAGGCAAATGGGCAGTTATCACGGGCTGTACAGATGGAATAGGAAAAGCTTACACCCATGAGCTTGCAAGGCAAGGATTCAAGTTAGTCCTCATCAGTCGTACCCAGGAAAAGTTAGAATCTCTGGCAGCAGAACTGAAGGAAGCATATGGCACAGAAACTAAGATCATTGTAATGGACTTCACTGGGGGAGCTGAGATCTATGATGGCTTAGGAGAAAAACTTGCTGGTCTTGATATTGGTATATTAGTCAATAATGTTGGAGTCTCCCATTACCCAGAGTTTTTTGCCAATATGAAGCAGGAGGATGCGTGGAAGATGATAAATGTCAATGCTCTTTCAGTGACCATGATGACTCATACGATCCTCCCTGAGATGGCTGCAAGAGGAAGAAGCCTTATTGTAAATGTTGCCTCTGCAGCAGGCTTGACTCCCACTCCACTGCTGTCAATGTACTCAGGAACTAAGGTGTTTGTAGATTTCTTCAGTAGATGTCTCAATGCTGAGTATTCATCAAAGGGAGTCACAGTTCAGTGTGTCTTACCTTATTATGTGGCCACTAAGATGAGCAGAATCAGGAATCCAAACATCTTTGCTCCTGGCCCAACCACCTATGTCCGTCAGGCCCTGGGAACAGTTGGTGTGGAGTCCAGGACTATGGATGTTGGAGCCACGCTCTTCAGGCGTTCAAGTTTGTTTCCACTTCTCCTGATACTGCTGGTAATAGTGCACTCATCTCTGTGGGCCACTGTTGATGGGACCTTATCAAGCAGTGATATCCAAGTTACAAACCTCAAACTTCAACCATCAAGGCCAGACAATGTTTACTTTTCCTTGCGCGGCTCAACATTTGTTCTAAACTGCACCACTGTAGTGAGTAATGTGCAGGCTTTTAATTTGACATGGCAACACGATGGTGAACGTTATTTCAGTGAAGCACAACAAGTTGACAGTTCAACAGTACAACTGAAATTATCCAATACAACAACAACAACGGATAATGGCGTTTATTGGTGTGGTCCGTTATTTATTAGCAATAAATCACAAGGAGTCAACATATCTCTTATAGTGGCAGACCAAGATTATAACAACAAAACAGAGTTTACCCTGCTCAAAGCATTGGAAGCATTTATGGAGTATTATGTCTACCTAATGGTCAGATTTGTTAATGGAAATGAAGTGAGTGCTCATAGTGAAGTGTTAGGACCACGCATTATCAAAACACCACCAGGAGACCCAGGTACTCCACCCAAGGTGATAAGGGTTCAGTCTGTGAGATTTCCTGGTAATGCTGCATTGAGAAATGTTACAGTGGATTGGGAGTTGGCAGACACTTTATCCTGGCATGGCACTCCAGATAAATACATTGTTAATTGCAATCACCATCGCCGTAGCCTGGGTTCACTTCCAAACTGTGAATATCATGTGGATGCGATGACAAATAGAACTGTTTTGCAAGGACTGAACTCTGCAGACAGATACAATGTGTACATAACGATGTGCAATAAACAGAAAGGATGTAGTGTGCATGGTGAATCATATTTAATCAAGGAGCTAGAAGATAACACGACACTGTCAAACAATGGAGGACAACTGAGCAGCAAACAGATTGCTTTCATTACAGTTTCAGTGGTGGTTGGATGTATAACAGCTCTGTGGTGTAGTTTAGAGCTCTGTGAGAAAGATTCTGCGGTAGACTTGAGTATCTCTTGCAAGCCTCCTGCCATACATGGCTATGAATATGTCGATCATGTTGAACAAAATGACTATGATCGACTTTTTTGGACGAAGAGCAGGTGTGACTACAAATCATGGAAGGTGCCAAATGCCCAAGTGGAGCTCGTCGCAGGAATCAACGAATTAAACGACGTCTCAGACAGATTAGTGAATGTTTTGCAACAAGGTTGA

Transcript

OS493_031349-T1

Protein

Uniprot

Uniprot term	Description
Q6QA33	Very-long-chain 3-oxoacyl-CoA reductase-B OS=Danio rerio OX=7955 GN=hsd17b12b PE=2 SV=2
O57314	Very-long-chain 3-oxoacyl-CoA reductase OS=Anas platyrhynchos OX=8839 GN=HSD17B12 PE=2 SV=1
Q5XG41	Very-long-chain 3-oxoacyl-CoA reductase-A OS=Xenopus laevis OX=8355 GN=hsd17b12-a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR051019	Family	VLCFA Elongation and Steroid Dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43899	RH59310P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

Expression pattern

Expression trend for OS493_031349-T1 global co-expression network