Detailed information of OS493_031287-T1 in Lophelia pertusa

Genomic Location: scaffold_213:517337...521550
NR annotation: KAJ7377014.1, General transcription factor IIF subunit 2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8R0A0General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1
Q01750General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1
Q2T9L9General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17683TFIIF_beta_NTFIIF, beta subunit N-terminusFamilyInterproscan
PF02270TFIIF_betaTFIIF, beta subunit HTH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR040504DomainTFIIF, beta subunit, N-terminalInterproscan
IPR011039Homologous_superfamilyTranscription Factor IIF, Rap30/Rap74, interactionInterproscan
IPR003196FamilyTranscription initiation factor IIF, beta subunitInterproscan
IPR040450DomainTFIIF beta subunit, HTH domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10445GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0005674Cellular Componenttranscription factor TFIIF complexInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03139TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit betaEC:5.6.2.-
Transcription machineryko03021deepkoala

Expression pattern
 Expression trend for OS493_031287-T1 global co-expression network
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