Detailed information of OS493_030810-T1 in Lophelia pertusa

Genomic Location: scaffold_203:96404...108893
NR annotation: KAJ7353967.1, GTPase-activating protein S13 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3ZCC9Protein SEC13 homolog OS=Bos taurus OX=9913 GN=SEC13 PE=2 SV=1
P55735Protein SEC13 homolog OS=Homo sapiens OX=9606 GN=SEC13 PE=1 SV=3
Q9D1M0Protein SEC13 homolog OS=Mus musculus OX=10090 GN=Sec13 PE=1 SV=3
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR037363FamilySec13/Seh1 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11024NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0030127Cellular ComponentCOPII vesicle coatInterproscan
GO:0031080Cellular Componentnuclear pore outer ringInterproscan
GO:0032008Biological Processpositive regulation of TOR signalingInterproscan
GO:0032527Biological Processprotein exit from endoplasmic reticulumInterproscan
GO:0090114Biological ProcessCOPII-coated vesicle buddingInterproscan

Expression pattern
 Expression trend for OS493_030810-T1 global co-expression network
TOP