Detailed information of OS493_030648-T1 in Lophelia pertusa

Genomic Location: scaffold_200:561024...563205
NR annotation: KAJ7383117.1, Ventral anterior homeobox 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q804S6Homeobox protein EMX1 OS=Danio rerio OX=7955 GN=emx1 PE=2 SV=1
Q6GLB9Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 PE=2 SV=1
Q04743Homeobox protein EMX2 OS=Homo sapiens OX=9606 GN=EMX2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR050877FamilyEMX/VAX/Noto Homeobox Transcription FactorsInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24339HOMEOBOX PROTEIN EMX-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09317EMX; homeobox protein EMX-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_030648-T1 global co-expression network
TOP