Detailed information of OS493_030563-T1 in Lophelia pertusa

Genomic Location: scaffold_198:114089...123977
NR annotation: KAJ7323775.1, Transcription intermediary factor 1-alpha [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q64127Transcription intermediary factor 1-alpha OS=Mus musculus OX=10090 GN=Trim24 PE=1 SV=1
Q6E2N3E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio OX=7955 GN=trim33 PE=2 SV=1
O15164Transcription intermediary factor 1-alpha OS=Homo sapiens OX=9606 GN=TRIM24 PE=1 SV=3
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00439BromodomainBromodomainDomainInterproscan
PF00643zf-B_boxB-box zinc fingerDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001487DomainBromodomainInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR003649DomainB-box, C-terminalInterproscan
IPR000315DomainB-box-type zinc fingerInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45915TRANSCRIPTION INTERMEDIARY FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000790Cellular ComponentchromatinInterproscan

Expression pattern
 Expression trend for OS493_030563-T1 global co-expression network
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