Gene detail

Detailed information of OS493_030419-T1 in Lophelia pertusa

Genomic Location: scaffold_195:570685...605355
NR annotation: KAJ7377217.1, DNA repair endonuclease XPF [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_030419-T1

ATGGCGGCACTATCTGAATATGAAAATTCGATGTTTCTTGAGCTTATGGATGACGATGGGCTGTTCGTCACAGCTAAGGGACTGAGTATAGAGCGTGTTATCACGAATTTTCTGAAGATCCATTGTGTCACAAGTGATCCTTCGTCCATTTCATTAGTCCTTGTAATCAACACAACAGATCAGGAAGAAGACTACATACTTGATGAACTGAAGTCTTCAGATGTTCCGCTACCAAAAGTTATCACCACTGAATTCAGTTCATCTGAGAGGGAGTCTGTGTACCTCAGTGGAGGTGTGCTGTTTGTCACGTCAAGAATCTTGGTCGTGGATATGCTGACCAAGAGGCTTCCCATTCATCTGGTGACAGGAATTGTTGTCTACCGCGCTCATAAAATCATTGAATCTTGCCAAGAGGCTTTCATACTACGACTCTACAGAGAAAACAACAAGACTGGTTTCATTAAAGCCTTCTCAGATAATCCTCAGGCTTTCACTAATGGCTTCTTTCAAGTGGAGAAAGTGATGAAGAACTTGTTTGTTCGAAAACTCTATCTCTGGCCCAGATTTCATGCAACAGTTTCAGCTTTTCTGGAAAAGCACAAGCCAGAGGTTATTGAGCTTCACCTTCACTTAACACCCTCCATGCTGGCCATCCAGACGGCAGTTCTTGATTTGACTGACACCTGTCTAAAAGAACTGAAGAGAGCAAACCCAACGCTTGATGCAGATGATCTTACAGTGGAGAACAGCATCAGCAAGTCTTTTGACAAAATTCTGAGATTTCAGCTAAATCCTGTCTGGCATCAACTGGGAAACAAGACAAAGCAATTGGTTGCTGATCTTAAAGTACTGAGGCTGATTTTACTGTACCTAACACAGTATGACTGCATCACATTCTACAACTTTCTGGAATCATTAAGGGCCAGTCAGCGCGATGTCAAGAATCATTCCCTTTGGATGTTCATGGATGCCGCAGATTCCTTGTTTGTGCATGCAAAAGACAGAGTTGTGGAGTACACTGAGAGGAAAAACAAGAAGATGAAAGGAGAGAAAACAAAACAGAAAGATGACAAGAATCTTAGTTCTGACATTGAGAAGGAACAGAAAGAGGAACTTGTTTTGGAAGAGAGTCCAAAGTGGAAGCTACTCGCGGATGTCTTGGACGAGATAGAACGTGATGATGCCAAGAATGATACCAAACTTGGTCCGGGCCATGTACTGATAGCTGCTTATGATGAGAGAACATGTTCACAGCTCAGAGATTATCTCTGTGATGGTGGCGAAGCTGTGCTCAAACATCTTTACAACAAGTTGATTAAGAATCCAACAACAGTGGCTGAAACTACAGAAACAGCTTCTTTCAGTGGAGAAACTTTGCGAGGTTATGCTGTTGCAGATGTTGCTAAGAAAGCGGATGTACCATCATCGCGTCAACGTAAAGCCAGAGCTAAGGCTGGAGACAAAGGCAATGCCAAAGGGAAAGTTGCTGCAACAAAGAACACTGTGAATACAGATGACTCAAATGATGGAACAATTGCATCAACCACACAGTTATTCAAAGGCTCAAGATCTAATGTTATCTTAAGGCCAGGTGAAGAAGATAACAAAGGGGAAGAAGAGGGTTCACCGCCAATAAAACTGTTGTCTTCGCGAGTGGTAATCATTCATCCTCTGACAGGATGCAGTGATCGCTACAGTTTACTGAGAACTCTTTGTGAAGTTGAGCCACGCTATGTTGTGCTGTATGATGCACAAATGCAGTTCATACGGCAGCTCGAGGTTTACAAGGCTTCAAGACCTGGAATTCCTCTTCGTGTTTATTTCTTAATTTACACTGGCTCTGTCGAGGAACAGAAATACTTAACAACTCTTCGCAAAGAAAAGGAAGCATTTGAGGCGCTCATCAAAGATAAAGGAACCATGGTTGTCCCCGAGGAGCGAGAAGGCAGAACAAGCGCGGCCATGATGTTGAGTAGAGATCCATCCAAGGCTACTGATGCTGTGAGCACACGGAAAGCAGGAACACGTGACGGAGACAACAAGACACCGAGAAAGGTCATTGTCGACATGCGTGAGTTTCGCAGTGAGCTTCCTTCCCTGATACATCGGAGAGGAATTGATATAGAACCTGTCACATTAGAGGTCGGGGACTACATTCTCACTCCAGATATGTGTGTGGAACGGAAGAGTATAGGTGATTTGATTGGCTCTCTAAACAATGGAAGACTGTACAACCAGGCGGTTTCAATGACCAGGTTTTACAAAAGACCCATTCTTTTGATTGAATTTGACCCTAACAAGTCATTTTCATTACAGTTGAGAATCTTGTGGTGCCATAGTCCTTATGCAACTGCTGAATTGTTCGACGATTTGAAGACGAATTATCCTGAGCCAGATGCTAACACAGCCATGGCGGTTGGATCTGACCCTACAGCAGCAGCCGCTGATATTACCTACAACATAGGACCACAGGACTTTATTTTGAAGCTTCCAGGGATAAATTTCAAGAACTACAGATTTATTATGCAAAACGTCGAGAGTGTTCAAGAACTGTTCACGTTGTCACAAGAAAGACTCGCAGCTATTTTAGGCAATGCTGGCAGTGCCAAGCAATTGTGGGAGTTTATTCACGCCGATAACAAGCCTCACGCGAAGGCACCAACTTCCTTGAATGTCAAAAGATGA

Transcript

OS493_030419-T1

Protein

Uniprot

Uniprot term	Description
Q92889	DNA repair endonuclease XPF OS=Homo sapiens OX=9606 GN=ERCC4 PE=1 SV=3
Q9QYM7	DNA repair endonuclease XPF OS=Cricetulus griseus OX=10029 GN=ERCC4 PE=2 SV=3
Q9QZD4	DNA repair endonuclease XPF OS=Mus musculus OX=10090 GN=Ercc4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732	ERCC4	ERCC4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006166	Domain	ERCC4 domain	Interproscan
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR047520	Domain	DNA repair endonuclease XPF, nuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10150	DNA REPAIR ENDONUCLEASE XPF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0000014	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0000110	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006296	Biological Process	obsolete nucleotide-excision repair, DNA incision, 5'-to lesion	Interproscan
GO:1901255	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10848	ERCC4, XPF; DNA excision repair protein ERCC-4	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala

Expression pattern

Expression trend for OS493_030419-T1 global co-expression network