Detailed information of OS493_030235-T1 in Lophelia pertusa

Genomic Location: scaffold_192:492171...501254
NR annotation: KAJ7324062.1, U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit- protein 2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q15696U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens OX=9606 GN=ZRSR2 PE=1 SV=2
Q15695U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens OX=9606 GN=ZRSR2P1 PE=1 SV=2
Q62377U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus OX=10090 GN=Zrsr2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009145FamilyU2 auxiliary factor small subunitInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0089701Cellular ComponentU2AF complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0030628Molecular Functionpre-mRNA 3'-splice site bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24273ZRSR; U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_030235-T1 global co-expression network
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